Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G023000.1 | Wheat | cytosol, plastid | 88.28 | 94.81 |
| TraesCS2A01G022200.1 | Wheat | plastid | 88.97 | 89.27 |
| TraesCS2D01G023500.1 | Wheat | endoplasmic reticulum | 67.07 | 89.02 |
| HORVU2Hr1G003370.11 | Barley | cytosol | 68.28 | 84.62 |
| EER89201 | Sorghum | nucleus | 60.0 | 60.52 |
| Os04t0185100-01 | Rice | cytosol, mitochondrion, plastid | 60.0 | 59.18 |
| Zm00001d045354_P002 | Maize | nucleus | 57.93 | 58.64 |
| HORVU4Hr1G047140.6 | Barley | plastid | 18.1 | 48.17 |
| GSMUA_Achr10P... | Banana | nucleus | 40.69 | 43.3 |
| GSMUA_Achr8P03390_001 | Banana | cytosol, nucleus, plastid | 22.59 | 34.03 |
| VIT_07s0005g03090.t01 | Wine grape | nucleus | 33.28 | 33.45 |
| PGSC0003DMT400028257 | Potato | nucleus, plastid | 32.93 | 32.76 |
| Solyc01g006140.2.1 | Tomato | nucleus | 32.07 | 32.52 |
| Solyc06g008510.2.1 | Tomato | nucleus, plastid | 32.24 | 32.08 |
| AT2G31270.1 | Thale cress | nucleus, plastid | 30.86 | 31.35 |
| CDY67450 | Canola | cytosol | 14.14 | 30.6 |
| Bra014797.1-P | Field mustard | cytosol, plastid | 23.97 | 30.22 |
| CDY23948 | Canola | nucleus, plastid | 28.79 | 30.2 |
| CDX76134 | Canola | cytosol, plastid | 24.31 | 30.19 |
| CDX84793 | Canola | nucleus, plastid | 28.62 | 30.13 |
| Bra022834.1-P | Field mustard | nucleus, plastid | 28.62 | 30.13 |
| Bra014795.1-P | Field mustard | cytosol | 18.28 | 30.11 |
| CDX76137 | Canola | cytosol, plastid | 24.31 | 29.87 |
| CDY24744 | Canola | nucleus | 29.83 | 29.52 |
| CDY15409 | Canola | nucleus, plastid | 25.17 | 29.44 |
| CDY13226 | Canola | cytosol, plastid | 24.14 | 29.35 |
| KRH32170 | Soybean | plastid | 29.31 | 28.52 |
| Bra018272.1-P | Field mustard | nucleus | 28.79 | 28.45 |
| CDY10780 | Canola | nucleus | 28.62 | 28.28 |
| AT3G54710.1 | Thale cress | cytosol, plastid | 23.28 | 27.78 |
| KRH19542 | Soybean | nucleus | 28.28 | 26.49 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 25.0 | 25.99 |
| GSMUA_Achr9P25190_001 | Banana | endoplasmic reticulum, vacuole | 40.17 | 24.4 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G030600.1 | EnsemblPlantsGene:TraesCS2B01G030600 | Gene3D:1.10.10.1420 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C | InterPro:WH_DNA-bd_sf |
| PANTHER:PTHR28637 | PANTHER:PTHR28637:SF5 | PFAM:PF08839 | PFAM:PF16679 | SEG:seg | SMART:SM01075 |
| SUPFAM:SSF46785 | TIGR:cd08674 | TIGR:cd08767 | MapMan:13.2.1.3 | : | : |
Description
No Description!
Coordinates
chr2B:-:13913351..13916145
Molecular Weight (calculated)
63577.0 Da
IEP (calculated)
9.490
GRAVY (calculated)
-0.435
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAATPSKKP RTTAASTAGS PWKVKTSVVS SAGQFATPEK VKRAVPAAAA DLVTPEKTEP RPLLRRGRSG GAVALSVKEV RRAALELQRA GRGPAAGVDA
101: GAEDALESVE RELGVGAGAG RSPVKRRPEV KLPESYEILC EFFNCFESST RLLRMKGSKA TFPNICASIQ NLAERRFTYG HLAQLKYIMP EAIVINKILL
201: RDDKTCCMKP DLQVNLLVDS VEDSAMQKGE TRYSALRRMF RQRLVDFFRK HPEGDDIPEH ELPYPFTQAK SSVAQSTPRV VTEVVFAAPS PSLAEQPAVA
301: LSHMSQSFKR RFSQRSSTCS ATASTTGLPP KAESTAPSPL GRKLMLSSTS GGIDHESQVQ EKSSKDVALR FGVTEGTPAK FASTPVRSMA GTPNLETPQR
401: PISATVCDTP PLNTAKRSAR AKLFMTPTKD ASRMEEENQS MSSTSPSDGD DELLGFLPKS LLQSVKEKEK RTLEEKETGF ADHVQRQKLI SCLPSTFDII
501: FLIYQSRQRT VLTKQELIHK IIESNPKIVD KGEVEEQVRL LLEFVPEWIS EKTARNGDIL CCVNTALSQS EVRQRLSGVE
101: GAEDALESVE RELGVGAGAG RSPVKRRPEV KLPESYEILC EFFNCFESST RLLRMKGSKA TFPNICASIQ NLAERRFTYG HLAQLKYIMP EAIVINKILL
201: RDDKTCCMKP DLQVNLLVDS VEDSAMQKGE TRYSALRRMF RQRLVDFFRK HPEGDDIPEH ELPYPFTQAK SSVAQSTPRV VTEVVFAAPS PSLAEQPAVA
301: LSHMSQSFKR RFSQRSSTCS ATASTTGLPP KAESTAPSPL GRKLMLSSTS GGIDHESQVQ EKSSKDVALR FGVTEGTPAK FASTPVRSMA GTPNLETPQR
401: PISATVCDTP PLNTAKRSAR AKLFMTPTKD ASRMEEENQS MSSTSPSDGD DELLGFLPKS LLQSVKEKEK RTLEEKETGF ADHVQRQKLI SCLPSTFDII
501: FLIYQSRQRT VLTKQELIHK IIESNPKIVD KGEVEEQVRL LLEFVPEWIS EKTARNGDIL CCVNTALSQS EVRQRLSGVE
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.