Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0568200-01 | Rice | nucleus | 48.17 | 75.0 |
| TraesCS4D01G007000.1 | Wheat | nucleus | 86.24 | 74.6 |
| TraesCS4B01G008300.1 | Wheat | nucleus | 83.49 | 71.09 |
| HORVU4Hr1G001140.1 | Barley | nucleus | 73.85 | 67.36 |
| EER98514 | Sorghum | nucleus | 47.71 | 59.77 |
| GSMUA_Achr8P07750_001 | Banana | cytosol | 38.53 | 59.15 |
| Zm00001d019865_P001 | Maize | nucleus | 46.33 | 57.71 |
| KRH25243 | Soybean | nucleus | 32.57 | 47.02 |
| KRH30420 | Soybean | nucleus | 34.4 | 46.58 |
| VIT_06s0080g00460.t01 | Wine grape | nucleus | 36.7 | 41.45 |
| PGSC0003DMT400067767 | Potato | nucleus | 32.57 | 41.28 |
| Solyc11g068480.1.1 | Tomato | nucleus | 33.03 | 41.14 |
| CDX71450 | Canola | nucleus | 32.57 | 33.18 |
| CDY04497 | Canola | nucleus | 33.03 | 33.03 |
| Bra012016.1-P | Field mustard | nucleus | 32.57 | 32.13 |
| CDY31178 | Canola | nucleus | 29.82 | 30.81 |
| AT2G27470.1 | Thale cress | nucleus | 30.73 | 24.36 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G306400.1 | EnsemblPlantsGene:TraesCS4A01G306400 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF81 |
| PFAM:PF00808 | SEG:seg | SUPFAM:SSF47113 | MapMan:13.2.3.3.3 | : | : |
Description
No Description!
Coordinates
chr4A:-:601042166..601044648
Molecular Weight (calculated)
22794.7 Da
IEP (calculated)
6.158
GRAVY (calculated)
-0.736
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEAKEPEA AAQGEGSKPK TKAKKPKAAA AAAEEGEGAK ANKAKKPKPA AAAAEEGEGS KAKKPAAASV PAMAEAEVEE LPKAIVRRLV KDKLARAASG
101: GEGAEGGAEV IVNKDAMAAF AESARIFIHY LSATANDVCK DGKRQTINAE DVFKALDEIE FPEFVEPLRT ALEEFRSRNA ARKPASGKKQ SEKKRKLDKE
201: AVPEEQNGAA DEANAGED
101: GEGAEGGAEV IVNKDAMAAF AESARIFIHY LSATANDVCK DGKRQTINAE DVFKALDEIE FPEFVEPLRT ALEEFRSRNA ARKPASGKKQ SEKKRKLDKE
201: AVPEEQNGAA DEANAGED
001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE
Arabidopsis Description
NF-YB11Nuclear factor Y, subunit B11 [Source:UniProtKB/TrEMBL;Acc:Q9ZQH2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.