CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25243	Soybean	nucleus	77.64	82.78
GSMUA_Achr8P07750_001	Banana	cytosol	52.17	59.15
Os09t0568200-01	Rice	nucleus	44.72	51.43
PGSC0003DMT400067767	Potato	nucleus	52.8	49.42
Solyc11g068480.1.1	Tomato	nucleus	52.17	48.0
VIT_06s0080g00460.t01	Wine grape	nucleus	52.8	44.04
EER98514	Sorghum	nucleus	44.72	41.38
Zm00001d019865_P001	Maize	nucleus	44.72	41.14
CDY04497	Canola	nucleus	54.04	39.91
CDX71450	Canola	nucleus	52.8	39.72
Bra012016.1-P	Field mustard	nucleus	53.42	38.91
CDY31178	Canola	nucleus	48.45	36.97
TraesCS4A01G306400.1	Wheat	nucleus	46.58	34.4
HORVU4Hr1G001140.1	Barley	nucleus	47.2	31.8
TraesCS4D01G007000.1	Wheat	nucleus	46.58	29.76
AT2G27470.1	Thale cress	nucleus	50.31	29.45
TraesCS4B01G008300.1	Wheat	nucleus	45.96	28.91

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100306382	MapMan:13.2.3.3.3	EMBL:ACUP02007007	EMBL:BT090451	UniProt:C6SZ53
InterPro:CBFA_NFYB_domain	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G183100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	EnsemblPlants:KRH30420	ProteinID:KRH30420	ProteinID:KRH30420.1	PFAM:PF00808	PANTHER:PTHR11064
PANTHER:PTHR11064:SF81	SUPFAM:SSF47113	UniParc:UPI0001B14E63	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:25067741..25069646

Molecular Weight (calculated)

17950.8 Da

IEP (calculated)

4.775

GRAVY (calculated)

-1.050

Length

161 amino acids

Sequence
(BLAST)

001: MSEAEELPRS IVRRVVKDKL SRCSEDGEIS VSKDALLAFS ESGRIFIHYL SATANDICKE SKRQIINVED VFKALEETEF PEFLRPLKAS LEEFRKKNAG
101: KKAAVSKGKD DEPRKKRKLE GESPDKGEGS DKAELSDKGE DPDKGESDKG ESGDETNDLK E

Best Arabidopsis Sequence Match ( AT2G27470.1 )
(BLAST)

001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE

Arabidopsis Description

NF-YB11Nuclear factor Y, subunit B11 [Source:UniProtKB/TrEMBL;Acc:Q9ZQH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.