Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G007000.1 | Wheat | nucleus | 82.42 | 83.73 |
| TraesCS4A01G306400.1 | Wheat | nucleus | 71.09 | 83.49 |
| Os09t0568200-01 | Rice | nucleus | 40.62 | 74.29 |
| HORVU4Hr1G001140.1 | Barley | nucleus | 63.67 | 68.2 |
| EER98514 | Sorghum | nucleus | 40.62 | 59.77 |
| GSMUA_Achr8P07750_001 | Banana | cytosol | 32.42 | 58.45 |
| Zm00001d019865_P001 | Maize | nucleus | 38.67 | 56.57 |
| KRH25243 | Soybean | nucleus | 27.73 | 47.02 |
| KRH30420 | Soybean | nucleus | 28.91 | 45.96 |
| VIT_06s0080g00460.t01 | Wine grape | nucleus | 30.86 | 40.93 |
| PGSC0003DMT400067767 | Potato | nucleus | 26.95 | 40.12 |
| Solyc11g068480.1.1 | Tomato | nucleus | 27.34 | 40.0 |
| CDX71450 | Canola | nucleus | 27.34 | 32.71 |
| CDY04497 | Canola | nucleus | 27.73 | 32.57 |
| Bra012016.1-P | Field mustard | nucleus | 27.34 | 31.67 |
| CDY31178 | Canola | nucleus | 25.39 | 30.81 |
| AT2G27470.1 | Thale cress | nucleus | 25.39 | 23.64 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G008300.1 | EnsemblPlantsGene:TraesCS4B01G008300 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF81 |
| PFAM:PF00808 | SEG:seg | SUPFAM:SSF47113 | MapMan:13.2.3.3.3 | : | : |
Description
No Description!
Coordinates
chr4B:-:5458501..5460514
Molecular Weight (calculated)
26421.0 Da
IEP (calculated)
9.290
GRAVY (calculated)
-0.712
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEAKEPEA AAQGEGSKAK AKKPKAAAAA AAQDGEGAKA KAKKPKAAAA AEEGEGAKAK AKKPKAAAAA EEGEGSKAKK PKAAAAAEEG EGAKAKKPKA
101: AGAPVAAMAE AEVEELPKAI VRRLVKDKLA RAASGGEGAE GGAEVIVNKD AMAAFAEGAR IFIHYLSATA NDVCKDGKRQ TINAEDVFKA LDEIEFPEFV
201: EPLRTALEEF RSRNAARKPA SGKKQSEKKR KLDKEAVPEE QNGAADEANA DKDEFF
101: AGAPVAAMAE AEVEELPKAI VRRLVKDKLA RAASGGEGAE GGAEVIVNKD AMAAFAEGAR IFIHYLSATA NDVCKDGKRQ TINAEDVFKA LDEIEFPEFV
201: EPLRTALEEF RSRNAARKPA SGKKQSEKKR KLDKEAVPEE QNGAADEANA DKDEFF
001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE
Arabidopsis Description
NF-YB11Nuclear factor Y, subunit B11 [Source:UniProtKB/TrEMBL;Acc:Q9ZQH2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.