Factsheet for VIT_06s0080g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07750_001	Banana	cytosol	44.56	60.56
Os09t0568200-01	Rice	nucleus	42.49	58.57
KRH25243	Soybean	nucleus	41.45	52.98
KRH30420	Soybean	nucleus	44.04	52.8
PGSC0003DMT400067767	Potato	nucleus	41.45	46.51
Solyc11g068480.1.1	Tomato	nucleus	41.45	45.71
EER98514	Sorghum	nucleus	39.9	44.25
Zm00001d019865_P001	Maize	nucleus	38.34	42.29
CDX71450	Canola	nucleus	46.63	42.06
CDY04497	Canola	nucleus	46.11	40.83
Bra012016.1-P	Field mustard	nucleus	46.63	40.72
CDY31178	Canola	nucleus	40.93	37.44
TraesCS4A01G306400.1	Wheat	nucleus	41.45	36.7
HORVU4Hr1G001140.1	Barley	nucleus	40.93	33.05
TraesCS4D01G007000.1	Wheat	nucleus	41.45	31.75
AT2G27470.1	Thale cress	nucleus	45.08	31.64
TraesCS4B01G008300.1	Wheat	nucleus	40.93	30.86

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100262207	wikigene:100262207	MapMan:13.2.3.3.3	InterPro:CBFA_NFYB_domain	ProteinID:CBI28316
ProteinID:CBI28316.3	UniProt:D7TCU3	EMBL:FN595757	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	EntrezGene:LOC100262207	wikigene:LOC100262207	PFAM:PF00808	PANTHER:PTHR11064	PANTHER:PTHR11064:SF81
SUPFAM:SSF47113	TIGR:TC70010	UniParc:UPI0001985B36	ArrayExpress:VIT_06s0080g00460	EnsemblPlantsGene:VIT_06s0080g00460	EnsemblPlants:VIT_06s0080g00460.t01
RefSeq:XP_002275482	RefSeq:XP_002275482.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:20423171..20431366

Molecular Weight (calculated)

21471.9 Da

IEP (calculated)

5.514

GRAVY (calculated)

-1.159

Length

193 amino acids

Sequence
(BLAST)

001: MEKVAVAEVE ELPKTIVRRV VKDKLSQFSD DGDIIIHKDG LRAFCESARI FIHYLSATAN DLCKESRRQT INADDVLKAI EEIEFPEFVQ PLKASLDEFR
101: KKNAGKKAGA AKSKEAKKRK EDSSLNNEGD KGKNDGGDEG NEVEDDSHEP KQKSAGKKSG AGKSKKVNKK RKVEEVKQDD EGNEDEDDSH ANE

Best Arabidopsis Sequence Match ( AT2G27470.1 )
(BLAST)

001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE

Arabidopsis Description

NF-YB11Nuclear factor Y, subunit B11 [Source:UniProtKB/TrEMBL;Acc:Q9ZQH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.