CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04497	Canola	nucleus	86.92	85.32
CDY31178	Canola	nucleus	62.15	63.03
GSMUA_Achr8P07750_001	Banana	cytosol	39.25	59.15
KRH30420	Soybean	nucleus	39.72	52.8
KRH25243	Soybean	nucleus	35.05	49.67
Os09t0568200-01	Rice	nucleus	32.24	49.29
AT2G27470.1	Thale cress	nucleus	60.28	46.91
VIT_06s0080g00460.t01	Wine grape	nucleus	42.06	46.63
PGSC0003DMT400067767	Potato	nucleus	36.45	45.35
Solyc11g068480.1.1	Tomato	nucleus	36.92	45.14
EER98514	Sorghum	nucleus	34.11	41.95
Zm00001d019865_P001	Maize	nucleus	34.11	41.71
TraesCS4A01G306400.1	Wheat	nucleus	33.18	32.57
HORVU4Hr1G001140.1	Barley	nucleus	33.18	29.71
TraesCS4D01G007000.1	Wheat	nucleus	33.18	28.17
TraesCS4B01G008300.1	Wheat	nucleus	32.71	27.34

Protein Annotations

Gene3D:1.10.20.10	MapMan:13.2.3.3.3	GO:A0A078C3N1	UniProt:A0A078C3N1	ProteinID:AHI95685.1	InterPro:CBFA_NFYB_domain
EnsemblPlants:CDX71450	ProteinID:CDX71450	ProteinID:CDX71450.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00148306001
InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR11064	PANTHER:PTHR11064:SF81	SUPFAM:SSF47113
UniParc:UPI0004EEB71B	SEG:seg	:	:	:	:

Description

BnaC04g16850DBnaC04g16850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078C3N1]

Coordinates

chrLK031793:+:961338..962439

Molecular Weight (calculated)

23520.2 Da

IEP (calculated)

4.097

GRAVY (calculated)

-1.244

Length

214 amino acids

Sequence
(BLAST)

001: MDSEKAVVDE LPLAIVRRVV KDKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND ICKDSRRQTM KAEDVFKALE DMEFSEFLEP LKASLDDFKK
101: KNAGKKAAGG SGAAAAASKP KETKKRKHEE ASTQKGVRKS QRDEGDLKND EEDESDNTKG NADDNTEENG NNEEEEEDAN GNEDNSMEEA GSGSAEDDEN
201: EGSGEEEEGD DEDE

Best Arabidopsis Sequence Match ( AT2G27470.1 )
(BLAST)

001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE

Arabidopsis Description

NF-YB11Nuclear factor Y, subunit B11 [Source:UniProtKB/TrEMBL;Acc:Q9ZQH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.