CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30420	Soybean	nucleus	82.78	77.64
GSMUA_Achr8P07750_001	Banana	cytosol	52.98	56.34
Os09t0568200-01	Rice	nucleus	45.7	49.29
PGSC0003DMT400067767	Potato	nucleus	52.98	46.51
Solyc11g068480.1.1	Tomato	nucleus	52.32	45.14
VIT_06s0080g00460.t01	Wine grape	nucleus	52.98	41.45
Zm00001d019865_P001	Maize	nucleus	45.7	39.43
EER98514	Sorghum	nucleus	45.03	39.08
CDY04497	Canola	nucleus	50.99	35.32
CDX71450	Canola	nucleus	49.67	35.05
Bra012016.1-P	Field mustard	nucleus	50.33	34.39
CDY31178	Canola	nucleus	47.68	34.12
TraesCS4A01G306400.1	Wheat	nucleus	47.02	32.57
HORVU4Hr1G001140.1	Barley	nucleus	47.68	30.13
TraesCS4D01G007000.1	Wheat	nucleus	47.68	28.57
TraesCS4B01G008300.1	Wheat	nucleus	47.02	27.73
AT2G27470.1	Thale cress	nucleus	49.67	27.27

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100819488	MapMan:13.2.3.3.3	EMBL:ACUP02007225	InterPro:CBFA_NFYB_domain	ncoils:Coil
EnsemblPlantsGene:GLYMA_12G089400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	UniProt:I1LRH0	InterPro:IPR009072
EnsemblPlants:KRH25243	ProteinID:KRH25243	ProteinID:KRH25243.1	PFAM:PF00808	PANTHER:PTHR11064	PANTHER:PTHR11064:SF81
SUPFAM:SSF47113	UniParc:UPI000233C5C7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:7350151..7351263

Molecular Weight (calculated)

16965.9 Da

IEP (calculated)

5.226

GRAVY (calculated)

-0.964

Length

151 amino acids

Sequence
(BLAST)

001: MSEAEELPRS IMRRVVKYKL SRCSEDGEIS VSKDGLLAFS ESGRIFIHYL SATANDICKE SKRQIINVEN VFKALEETEF PEFVCPLKAS LEEFRKKNAR
101: KKVVVSKGKE DEPKKKRKLE GESSDKGEGS EKGEDNDKGE DSDKGVSGDD Q

Best Arabidopsis Sequence Match ( AT2G27470.1 )
(BLAST)

001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE

Arabidopsis Description

NF-YB11Nuclear factor Y, subunit B11 [Source:UniProtKB/TrEMBL;Acc:Q9ZQH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.