CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04497	Canola	nucleus	64.45	62.39
CDX71450	Canola	nucleus	63.03	62.15
GSMUA_Achr8P07750_001	Banana	cytosol	34.12	50.7
KRH30420	Soybean	nucleus	36.97	48.45
KRH25243	Soybean	nucleus	34.12	47.68
Os09t0568200-01	Rice	nucleus	28.91	43.57
PGSC0003DMT400067767	Potato	nucleus	34.12	41.86
AT2G27470.1	Thale cress	nucleus	54.5	41.82
VIT_06s0080g00460.t01	Wine grape	nucleus	37.44	40.93
Solyc11g068480.1.1	Tomato	nucleus	33.65	40.57
Zm00001d019865_P001	Maize	nucleus	29.38	35.43
EER98514	Sorghum	nucleus	28.44	34.48
TraesCS4A01G306400.1	Wheat	nucleus	30.81	29.82
HORVU4Hr1G001140.1	Barley	nucleus	30.33	26.78
TraesCS4D01G007000.1	Wheat	nucleus	30.81	25.79
TraesCS4B01G008300.1	Wheat	nucleus	30.81	25.39

Protein Annotations

Gene3D:1.10.20.10	MapMan:13.2.3.3.3	GO:A0A078H2V0	UniProt:A0A078H2V0	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDY31178
ProteinID:CDY31178	ProteinID:CDY31178.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00047285001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR11064	PANTHER:PTHR11064:SF81	SUPFAM:SSF47113	UniParc:UPI0004EE031C
SEG:seg	:	:	:	:	:

Description

BnaC03g47130DBnaC03g47130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2V0]

Coordinates

chrLK032268:-:151689..152890

Molecular Weight (calculated)

23502.3 Da

IEP (calculated)

4.139

GRAVY (calculated)

-1.358

Length

211 amino acids

Sequence
(BLAST)

001: MTESEKVLED ELPLAIVRRV VKNKLSECSP EYDVSIHKEA ILAFSEGAWI FIHYLSATAN DNCKDSRRQT MKAEDVFKAI EDMGFEDFSE PLKASLEDFK
101: KKNAGKKAGG GEGAASSSKP KETGKRKQEG ASMQKGVRKC KSDEGDKKND ENDNTEENVN DEDDGTEENG NGEEDDEEGN EENMEEEFGS GEHDEKESGD
201: EKEADNKEED E

Best Arabidopsis Sequence Match ( AT2G27470.1 )
(BLAST)

001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE

Arabidopsis Description

NF-YB11Nuclear factor Y, subunit B11 [Source:UniProtKB/TrEMBL;Acc:Q9ZQH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.