Factsheet for Solyc11g068480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067767	Potato	nucleus	91.43	93.02
GSMUA_Achr8P07750_001	Banana	cytosol	45.14	55.63
KRH25243	Soybean	nucleus	45.14	52.32
KRH30420	Soybean	nucleus	48.0	52.17
Os09t0568200-01	Rice	nucleus	39.43	49.29
VIT_06s0080g00460.t01	Wine grape	nucleus	45.71	41.45
EER98514	Sorghum	nucleus	38.29	38.51
Zm00001d019865_P001	Maize	nucleus	37.14	37.14
CDX71450	Canola	nucleus	45.14	36.92
CDY04497	Canola	nucleus	45.71	36.7
Bra012016.1-P	Field mustard	nucleus	45.14	35.75
CDY31178	Canola	nucleus	40.57	33.65
TraesCS4A01G306400.1	Wheat	nucleus	41.14	33.03
HORVU4Hr1G001140.1	Barley	nucleus	41.14	30.13
TraesCS4D01G007000.1	Wheat	nucleus	41.14	28.57
TraesCS4B01G008300.1	Wheat	nucleus	40.0	27.34
AT2G27470.1	Thale cress	nucleus	41.71	26.55

Protein Annotations

EnsemblPlants:Solyc11g068480.1.1	EnsemblPlantsGene:Solyc11g068480.1	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:CBFA_NFYB_domain
InterPro:Histone-fold	InterPro:IPR009072	ncoils:Coil	PANTHER:PTHR11064	PANTHER:PTHR11064:SF81	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI000276A48A	UniProt:K4DA06	MapMan:13.2.3.3.3	:

Description

No Description!

Coordinates

chr11:+:53191216..53194134

Molecular Weight (calculated)

19868.2 Da

IEP (calculated)

4.642

GRAVY (calculated)

-0.950

Length

175 amino acids

Sequence
(BLAST)

001: MAEIEKQNKE KEKVVAETTV QIDQEGLPKT IVRRLVKEKL SQLSTDTDIS LLRDSLLAFS ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF
101: PELIEPLKAS LEGFREKNSK RKSTSSKSPE SNKKAKLKEP VENGKGKMKE QPSDNENEDA QAEEEVNEVE DRVDD

Best Arabidopsis Sequence Match ( AT2G27470.1 )
(BLAST)

001: MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK
101: KNAGKKAGAA AASYPAGGAA LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE NGNDEEDEND DENTEENGND
201: EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE

Arabidopsis Description

NF-YB11Nuclear factor Y, subunit B11 [Source:UniProtKB/TrEMBL;Acc:Q9ZQH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.