Factsheet for GSMUA_Achr9P25190_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
golgi 2
plasma membrane 2
vacuole 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P00090_001
GSMUA_Achr2P00100_001
GSMUA_Achr2P00160_001
GSMUA_Achr3P07710_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P07750_001
GSMUA_Achr9P17600_001
GSMUA_Achr9P17910_001
GSMUA_Achr9P17920_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	GSMUA_Achr9P17910_001	AT1G08260.1	22773747
AT2G31270.1	GSMUA_Achr9P17920_001	AT1G08260.1	22773747
AT2G31270.1	GSMUA_Achr10P...	AT2G31270.1	22773747
AT2G31270.1	GSMUA_Achr8P03390_001	AT2G31270.1	22773747
AT2G31270.1	GSMUA_Achr9P25190_001	AT2G31270.1	22773747
AT2G31270.1	GSMUA_Achr10P...	AT5G13060.1	18818695
AT2G31270.1	GSMUA_Achr10P...	AT5G13060.1	18818695
AT2G31270.1	GSMUA_Achr10P...	AT5G13060.1	18818695
AT2G31270.1	GSMUA_Achr10P...	AT5G13060.1	18818695
AT2G31270.1	GSMUA_Achr2P00090_001	AT5G13060.1	18818695
AT2G31270.1	GSMUA_Achr2P00100_001	AT5G13060.1	18818695
AT2G31270.1	GSMUA_Achr2P00160_001	AT5G13060.1	18818695
AT2G31270.1	GSMUA_Achr9P17600_001	AT5G13060.1	18818695
AT2G31270.1	GSMUA_AchrUn_...	AT5G13060.1	18818695
AT2G31270.1	GSMUA_Achr3P07710_001	AT5G22110.1	22773747
AT3G54710.1	GSMUA_Achr9P17910_001	AT1G08260.1	22773747
AT3G54710.1	GSMUA_Achr9P17920_001	AT1G08260.1	22773747
AT3G54710.1	GSMUA_Achr8P07750_001	AT2G27470.1	22773747
AT3G54710.1	GSMUA_Achr10P...	AT3G54710.1	22773747
AT3G54710.1	GSMUA_Achr8P03390_001	AT3G54710.1	22773747
AT3G54710.1	GSMUA_Achr9P25190_001	AT3G54710.1	22773747
AT3G54710.1	GSMUA_Achr10P...	AT5G13060.1	18818695
AT3G54710.1	GSMUA_Achr10P...	AT5G13060.1	18818695
AT3G54710.1	GSMUA_Achr10P...	AT5G13060.1	18818695
AT3G54710.1	GSMUA_Achr10P...	AT5G13060.1	18818695
AT3G54710.1	GSMUA_Achr2P00090_001	AT5G13060.1	18818695
AT3G54710.1	GSMUA_Achr2P00100_001	AT5G13060.1	18818695
AT3G54710.1	GSMUA_Achr2P00160_001	AT5G13060.1	18818695
AT3G54710.1	GSMUA_Achr9P17600_001	AT5G13060.1	18818695
AT3G54710.1	GSMUA_AchrUn_...	AT5G13060.1	18818695
AT3G54710.1	GSMUA_Achr3P07710_001	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	33.93	59.45
HORVU2Hr1G003370.11	Barley	cytosol	21.88	44.66
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	17.7	43.9
EER89201	Sorghum	nucleus	25.76	42.78
TraesCS2D01G023000.1	Wheat	cytosol, plastid	24.19	42.78
Zm00001d045354_P002	Maize	nucleus	25.65	42.76
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	19.16	41.88
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	25.76	41.84
TraesCS2A01G022200.1	Wheat	plastid	24.71	40.83
TraesCS2B01G030600.1	Wheat	plastid	24.4	40.17
VIT_07s0005g03090.t01	Wine grape	nucleus	23.14	38.3
Solyc06g008510.2.1	Tomato	nucleus, plastid	22.3	36.54
PGSC0003DMT400028257	Potato	nucleus, plastid	21.99	36.02
CDY67450	Canola	cytosol	9.74	34.7
Solyc01g006140.2.1	Tomato	nucleus	20.31	33.92
AT2G31270.1	Thale cress	nucleus, plastid	20.21	33.8
CDY23948	Canola	nucleus, plastid	19.27	33.27
CDY24744	Canola	nucleus	20.1	32.76
CDX76134	Canola	cytosol, plastid	15.81	32.33
Bra022834.1-P	Field mustard	nucleus, plastid	18.53	32.12
CDX84793	Canola	nucleus, plastid	18.53	32.12
HORVU4Hr1G047140.6	Barley	plastid	7.33	32.11
Bra014797.1-P	Field mustard	cytosol, plastid	15.39	31.96
CDY15409	Canola	nucleus, plastid	16.54	31.85
CDX76137	Canola	cytosol, plastid	15.6	31.57
Bra018272.1-P	Field mustard	nucleus	19.27	31.35
CDY10780	Canola	nucleus	19.16	31.18
KRH32170	Soybean	plastid	19.27	30.87
Bra014795.1-P	Field mustard	cytosol	11.31	30.68
AT3G54710.1	Thale cress	cytosol, plastid	15.5	30.45
CDY13226	Canola	cytosol, plastid	15.18	30.4
KRH19542	Soybean	nucleus	18.64	28.76
GSMUA_Achr2P10650_001	Banana	nucleus	13.82	23.16

Protein Annotations

EnsemblPlants:GSMUA_Achr9P25190_001	EnsemblPlants:GSMUA_Achr9T25190_001	EnsemblPlantsGene:GSMUA_Achr9G25190_001	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
InterPro:WH_DNA-bd_sf	PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF08839	PFAM:PF16679	SEG:seg
SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI000295156F	UniProt:M0U3C6	MapMan:13.2.1.3	:

Description

CDT1A - Putative DNA replication initiation protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G25190_001]

Coordinates

chr9:+:29755991..29764901

Molecular Weight (calculated)

107342.0 Da

IEP (calculated)

8.517

GRAVY (calculated)

-0.342

Length

955 amino acids

Sequence
(BLAST)

001: MFLLSVIHQK DSFLGSILST FASLVIRYEL LCEFLDSMES SIRLLRQKGL MSTFPNICTT IQSLMDRRFT YVHLARLKHI MPEAIMIKKV LLHDVATCSL
101: KTELQVTLRV DAVARNMQGK SETGRSILPA VFRERLVEFF KIHPEGDEVP VERLPHPFNL TEISGHPRVN INTESSSNAA VQQQFLVPSH LSQSFNILNP
201: HKTPLISPVS TTLSSIYGGG EKDAAGLSRT DYCSHEESKV QLETPSKLMF TPLTLMTDTP EIPVSKRCRT TAACDSTPSN KSVRRSTRTK LFMTPEESAE
301: AGEKESGDRI LCSSYDILSF LPETLLHSIK EKEQKTMQER EPGFAIAIRR KKLIASLPTI FDMILLIFQS WKRSVMTKQD LIHKLVSTHC KIVDQDEVED
401: QLKLLLEILP DWISKKIACD GDILCWKRPR SSLTTDQLWT PEKPAQHPRR ARNRSVAFSL TEVRRVALGL QRPAGSSHLD PLPVDDSGPC STPKPSRAKT
501: LPKLPEKYEI LCEFFNCMES SIRLLRLKGS MSTFPNISTS IQSLMDRRFT YVHLAQLKHI MPEAIMIKKV LLHDESTCCM KPELQVTLQV DAVAKNIKGR
601: SESGYSILRA VFRERLVEFF KNHPQGDEVP EEQLPHPFNP TKLSVHKSVT INADPSGTKS SSSAPIQQQF LVPSHMSQSF KRHFSRKIPV LNPEKTPPMC
701: SSEACPKDDH STFVDSSAIS KKSLLSSPIS TTLPVVEGGD ERDAAGSPRA DNYPHEESNV EKGTPAKLVC TPLRLMTDTP EIPTSKRLRT TPSNKSVRRS
801: ARTKLFMTPE KSANECDDDG SLSASDDVLN FLPKTLLQSI NVKEQKAVQE KQAGFADAIR RQKLIASLPN IFDMILLTFQ SWKRSVMTKH ELTNKLISSH
901: SKIVDQGEVE EQLKLLLELV PDWISEKIAC NGDTLCCVSK ISNAEEIRQR LLEAE

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.