Factsheet for GSMUA_Achr2P00160_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P00100_001	Banana	cytosol	45.56	60.75
GSMUA_Achr10P...	Banana	cytosol	43.55	54.0
GSMUA_Achr2P00090_001	Banana	cytosol	40.32	53.48
GSMUA_Achr10P...	Banana	cytosol	35.08	50.29
GSMUA_Achr10P...	Banana	cytosol	18.15	47.87
GSMUA_Achr10P...	Banana	endoplasmic reticulum	70.16	44.62
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	34.68	42.57
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	47.98	27.42
Solyc09g065210.2.1	Tomato	cytosol	60.89	21.33
PGSC0003DMT400033530	Potato	cytosol	60.89	21.33
GSMUA_Achr9P17600_001	Banana	cytosol	63.71	21.24
PGSC0003DMT400051860	Potato	cytosol	60.48	21.16
VIT_05s0020g03020.t01	Wine grape	cytosol	60.48	21.04
Solyc06g084250.2.1	Tomato	cytosol	59.27	20.85
KRH35552	Soybean	cytosol	59.27	20.79
KRH27617	Soybean	cytosol	59.27	20.76
KRH77872	Soybean	cytosol	58.87	20.68
KRG91259	Soybean	cytosol	58.87	20.65
CDX70871	Canola	cytosol	22.18	20.6
AT5G19330.1	Thale cress	cytosol	58.87	20.56
CDY51336	Canola	mitochondrion	19.35	20.51
Bra002228.1-P	Field mustard	nucleus	58.47	20.03
VIT_07s0104g00020.t01	Wine grape	cytosol	56.45	19.86
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	56.45	19.58
CDX88895	Canola	cytosol, nucleus, plastid	56.45	19.58
CDX92539	Canola	cytosol	53.63	18.97
Bra023389.1-P	Field mustard	plastid	42.74	16.28
CDX69674	Canola	cytosol	44.76	15.7
KRH67208	Soybean	cytosol	44.35	15.6
Bra008860.1-P	Field mustard	plastid	44.35	15.56
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	45.97	15.47
KRG95533	Soybean	cytosol	44.35	15.43
PGSC0003DMT400051857	Potato	endoplasmic reticulum	11.29	15.3
CDX97221	Canola	cytosol, mitochondrion	43.55	15.28
CDX85673	Canola	plastid	44.76	15.14
CDX91149	Canola	cytosol, mitochondrion	44.35	15.09
Bra030036.1-P	Field mustard	plastid	10.89	15.0
CDY15719	Canola	plastid	8.06	14.39
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	3.23	12.7
GSMUA_Achr2P00070_001	Banana	extracellular	7.26	11.76
GSMUA_Achr10P...	Banana	extracellular	4.44	10.58
CDY13990	Canola	nucleus	52.42	10.28
GSMUA_Achr10P...	Banana	cytosol	3.23	9.64
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	2.82	4.83
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	2.42	2.14

Protein Annotations

EnsemblPlants:GSMUA_Achr2P00160_001	EnsemblPlants:GSMUA_Achr2T00160_001	EnsemblPlantsGene:GSMUA_Achr2G00160_001	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:IPR000225
InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	PFAM:PF00651	PFscan:PS50176	SUPFAM:SSF48371
SUPFAM:SSF54695	UniParc:UPI000294D4A5	UniProt:M0S3V7	MapMan:35.1	:	:

Description

ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G00160_001]

Coordinates

chr2:-:337229..339268

Molecular Weight (calculated)

27830.9 Da

IEP (calculated)

7.386

GRAVY (calculated)

0.100

Length

248 amino acids

Sequence
(BLAST)

001: MLLGNVFEKN ILVNINIHLP QYSTLVSFSL YMDSHKQAGI VYNGGLVPLL KLLDSKNGCL QHNAAFALYG IAENEDNVSD FIKVGGVQKL QDGEFIIQAT
101: KDYVAMTTKR LEEKINGPIR FYLLYLMRVG EKVVQRRIAL ALAHLCSPED QRTIFIDDDG TLVKKSPTLC FVDAASPSPS PQVYLGEQYV NSSTLSYVSF
201: LVEGCKCFYA HRIALLASSD AFRAMFDGGY QVRELMCQPC LFFFRIRP

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.