CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99095
KRH10202
KRH19542
KRH23133
KRH23980
KRH32170
KRH45896
KRH70713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	KRG99095	AT1G26830.1	15659098
AT5G13060.1	KRH45896	AT1G26830.1	15659098
AT5G13060.1	KRH70713	AT1G26830.1	15659098
AT5G13060.1	KRG99095	AT1G69670.1	15659098
AT5G13060.1	KRH45896	AT1G69670.1	15659098
AT5G13060.1	KRH70713	AT1G69670.1	15659098
AT5G13060.1	KRH19542	AT2G31270.1	18818695
AT5G13060.1	KRH32170	AT2G31270.1	18818695
AT5G13060.1	KRH10202	AT4G14700.1	18818695
AT5G13060.1	KRH23133	AT4G14700.1	18818695
AT5G13060.1	KRH23980	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67208	Soybean	cytosol	85.13	86.1
Solyc06g084250.2.1	Tomato	cytosol	60.59	61.28
Solyc09g065210.2.1	Tomato	cytosol	60.45	60.88
VIT_07s0104g00020.t01	Wine grape	cytosol	60.17	60.85
KRH77872	Soybean	cytosol	59.05	59.63
KRH35552	Soybean	cytosol	59.05	59.55
KRH27617	Soybean	cytosol	58.77	59.18
KRG91259	Soybean	cytosol	58.49	58.98
Os05t0398100-01	Rice	cytosol	17.67	56.25
HORVU1Hr1G062160.1	Barley	cytosol	56.66	56.11
GSMUA_Achr9P17600_001	Banana	cytosol	58.34	55.91
TraesCS1A01G249400.1	Wheat	cytosol	56.38	54.92
EES19490	Sorghum	nucleus	57.08	54.63
TraesCS1D01G248900.1	Wheat	cytosol	56.66	54.45
TraesCS1B01G260100.1	Wheat	cytosol	56.52	54.31
CDX97221	Canola	cytosol, mitochondrion	50.35	50.78
GSMUA_Achr10P...	Banana	endoplasmic reticulum	27.77	50.77
CDX69674	Canola	cytosol	50.07	50.49
Zm00001d010341_P002	Maize	cytosol	54.28	50.46
Zm00001d038134_P001	Maize	cytosol	56.24	50.44
GSMUA_Achr10P...	Banana	cytosol	13.74	49.0
CDX91149	Canola	cytosol, mitochondrion	49.93	48.83
GSMUA_Achr2P00090_001	Banana	cytosol	12.76	48.66
CDX85673	Canola	plastid	49.51	48.16
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	49.65	48.03
PGSC0003DMT400051857	Potato	endoplasmic reticulum	12.2	47.54
Bra008860.1-P	Field mustard	plastid	47.12	47.52
GSMUA_Achr10P...	Banana	cytosol	11.36	46.82
KRH48502	Soybean	cytosol	9.68	45.1
Bra023389.1-P	Field mustard	plastid	40.53	44.39
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	15.43	44.35
GSMUA_Achr2P00100_001	Banana	cytosol	10.94	41.94
CDY51336	Canola	mitochondrion	12.9	39.32
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	11.08	39.11
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	22.02	36.18
Bra030036.1-P	Field mustard	plastid	8.42	33.33
CDY15719	Canola	plastid	6.31	32.37

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100783124	Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A0R0EMP2	EMBL:ACUP02012113
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:BTB/POZ_dom	EnsemblPlantsGene:GLYMA_19G156400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	EnsemblPlants:KRG95533
ProteinID:KRG95533	ProteinID:KRG95533.1	PFAM:PF00514	PFAM:PF00651	PFscan:PS50097	PFscan:PS50176
PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371
SUPFAM:SSF54695	UniParc:UPI0003DEB199	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:41692911..41698775

Molecular Weight (calculated)

79151.0 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.050

Length

713 amino acids

Sequence
(BLAST)

001: MENPHYAVRK SLKRKLEADL IHTSKQLHPK ISAKILRHVS LLNSAHPSSV SDCTAIKSAI DALSLLAENE DLVDTLLKCG VVPALVRHLR LTDNARRDDG
101: DEADSVKDDS DGVTKHFQFE VIKGCAVILE LLAIEKEYQQ LVVDAGALPC LVDWLRMQKI STIAQPLIDL LKRVADAITS LAHENTGIKT LVRMEGGIAP
201: LVELLEFNDI KVQRAAARAL RTLAFNNDAN KNQIVECNAL PTLVLMLQSE DPKVHYEAVG VIGNLVHSSP NIKKEVLLAG ALQPVISSLS SSCPESQREA
301: ALLIGQFATT DSDCKVHIGQ RGAIPPLVDM LKSPDVELQE MSAFALGRLA QDSHNQAGIA QSGGIEPLLK LLGSKKVPVQ QNAVFALYSL VDNENNVADI
401: IKKDGFQKLK AGNFRNQQTG VCVTKTLKRL EEKTQGRVSF LANSMRVLKH LIHLIRLAEE AVQRRVAIAL AYLCSPHDRK TIFIDNNGLK LLLDILKSSN
501: VKQKSDASMA LHQLAAKASS SFSLFDIAPP SPTPQMYLGE EYVNNPKLSD VTFLVEGRSF YAHRDCLVSS DIFRAMFDGS YREREAKNIV IPNIKWDVFE
601: LMMRFIYTGT VDVNLDIAQD LLRAADQYLL DGLKRICEYA IAQEISEENV SLLYKMSEDF NATSLKHSCI LFMLEKFDKL RSEPWYCPLV RHILPDICMF
701: FSTLLVKSHP ADS

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.