CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
nucleus 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92697
KRG95533
KRG96999
KRG98832
KRH05698
KRH11155
KRH15345
KRH19542
KRH21093
KRH23980
KRH32170
KRH34103
KRH37947
KRH37970
KRH42567
KRH46113
KRH58674
KRH67208
KRH68751
KRH70714
KRH74848

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	KRH70714	AT1G26840.1	16179646
AT4G12620.1	KRH74848	AT1G26840.1	16179646
AT4G12620.1	KRH05698	AT2G37560.1	16179646
AT4G12620.1	KRH15345	AT2G37560.1	16179646
AT4G12620.1	KRG95533	AT5G13060.1	18818695
AT4G12620.1	KRH67208	AT5G13060.1	18818695
AT4G14700.1	KRH11155	AT1G30210.1	18818695
AT4G14700.1	KRH21093	AT1G30210.1	18818695
AT4G14700.1	KRH42567	AT1G30210.1	18818695
AT4G14700.1	KRH58674	AT1G30210.1	18818695
AT4G14700.1	KRG92697	AT3G04620.1	20706207
AT4G14700.1	KRG96999	AT3G04620.1	20706207
AT4G14700.1	KRH34103	AT3G04620.1	20706207
AT4G14700.1	KRH68751	AT3G04620.1	20706207
AT4G14700.1	KRH19542	AT3G54710.1	18818695
AT4G14700.1	KRH32170	AT3G54710.1	18818695
AT4G14700.1	KRG98832	AT4G16630.1	20706207
AT4G14700.1	KRH37947	AT4G16630.1	20706207
AT4G14700.1	KRH37970	AT4G16630.1	20706207
AT4G14700.1	KRH46113	AT4G16630.1	20706207
AT4G14700.1	KRG95533	AT5G13060.1	18818695
AT4G14700.1	KRH67208	AT5G13060.1	18818695
AT4G14700.1	KRH23980	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23133	Soybean	nucleus	93.91	94.24
VIT_06s0004g00530.t01	Wine grape	cytosol	55.27	73.06
PGSC0003DMT400033355	Potato	cytosol	7.49	70.33
GSMUA_Achr8P31340_001	Banana	nucleus	62.06	66.25
Solyc03g006420.2.1	Tomato	nucleus	63.7	65.46
CDY16697	Canola	plastid	61.12	64.52
AT4G14700.1	Thale cress	plastid	61.01	64.4
CDY62377	Canola	plastid	61.12	63.97
Bra029471.1-P	Field mustard	plastid	60.77	63.84
VIT_06s0004g02050.t01	Wine grape	nucleus	67.45	63.44
PGSC0003DMT400033353	Potato	nucleus, plastid	55.5	63.37
AT4G12620.1	Thale cress	plastid	59.84	62.85
OQU75979	Sorghum	plastid	58.08	61.23
Zm00001d045080_P001	Maize	plastid	57.14	59.66
TraesCS7A01G151700.1	Wheat	plastid	53.51	58.37
TraesCS7D01G153500.1	Wheat	plastid	56.32	58.02
Zm00001d037086_P006	Maize	nucleus, plastid	56.67	54.69
TraesCS7B01G055600.1	Wheat	nucleus	56.67	54.63
VIT_13s0175g00030.t01	Wine grape	extracellular	9.95	54.14
HORVU7Hr1G031190.2	Barley	nucleus	56.44	50.95
HORVU3Hr1G033880.2	Barley	plastid	10.89	35.77
KRH46438	Soybean	plastid	11.94	21.61
KRG98340	Soybean	mitochondrion, plastid	11.94	21.52

Protein Annotations

Gene3D:1.10.8.1280	EntrezGene:100814940	MapMan:13.2.1.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02009122	InterPro:ATPase_AAA_core	InterPro:BAH_dom	EnsemblPlantsGene:GLYMA_15G034300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0005524	GO:GO:0046872	UniProt:I1MDB1	InterPro:IPR001025
InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH10202	ProteinID:KRH10202	ProteinID:KRH10202.1	InterPro:ORC1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016
PFscan:PS51038	PANTHER:PTHR10763	PANTHER:PTHR10763:SF23	SMART:SM00249	SMART:SM00382	SMART:SM00439
SUPFAM:SSF52540	SUPFAM:SSF57903	UniParc:UPI000296E753	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:2730657..2737709

Molecular Weight (calculated)

96991.1 Da

IEP (calculated)

8.007

GRAVY (calculated)

-0.590

Length

854 amino acids

Sequence
(BLAST)

001: MAATPSKFLQ TPSKPKLRSQ SNPKSSPVVT PDTPQTLYPR RSTRAKSLLF DAPKPPHTPL EISLTTPKRR IRRSIDCVDQ DSGEDKATTS KISDKNKAPV
101: VDASKKKKNG KNSIEVSFAP VTPASSEKAS TRKREGEGGV VTRAKRRKSE NREKSAKLPQ RRVYYTKVVY DGGEFELGDD VYVKRREDAS SDDEDPEMEE
201: CRMCFSSNDE VMIECDDCLG GFHLKCLRPP LKDVPEGDWI CGFCEARKMG MEVQLPKPPK GKKLVRTMRE KLLSSDLWSG RIKSIWREVD DNYWCRVRWY
301: TIPEETSVGR QPHNLRRELY RTNDFADIEM ESVLRHCHVM TPKEYAKASD EGDDVFLCEY EYDIHWHSFK RLADIDNETE NGEEHDSDED WNVDKESDSD
401: TDEDVEYEKE NIKNTQSKPS TSHHLAANLQ KGQFFGLQKI GTKTIPQHVR SHKQTDLERA KATLLLASLP KSLPCRNKEM EEITAFINGA LSDNQCLGRC
501: LYIHGVPGTG KTMSVLSVMR SLKSEVDAGN IKPYTFVEIN GLKLASPENI YKVIYEALNG HRVSWKKALH LLNERFVEGK KTRDEADRPC ILLIDELDLL
601: VTRNQSVLYN ILDWPTKPHS KLIVIGIANT MDLPEKLLPR ISSRMGIQRL CFGPYNYQQL QEIISSRLKG IDVFEKQAVE FASRKVAAIS GDARRALEIC
701: RRAAEIADYR MKKLISNPDC VTAGKGLVGM VDVEAAIQEM FQAPHIQMMK SCSRVSKILL TAMVHELYNT GMGETTFEKL AMRVSCFCTS NGEVFPGYDT
801: LLQVGCRLGE CRIILCEAGA KHRWQKLQLN FPSDDVAFAL RDCKDLPWLS KYLM

Best Arabidopsis Sequence Match ( AT4G14700.1 )
(BLAST)

001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL

Arabidopsis Description

ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.