Factsheet for VIT_06s0004g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02290.t01
VIT_07s0005g03090.t01
VIT_07s0104g00020.t01
VIT_10s0003g03910.t01
VIT_16s0039g01430.t01
VIT_16s0039g01440.t01
VIT_18s0001g10740.t01
VIT_18s0001g14540.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	VIT_01s0026g02290.t01	AT1G26840.1	16179646
AT4G12620.1	VIT_18s0001g10740.t01	AT2G37560.1	16179646
AT4G12620.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695
AT4G14700.1	VIT_10s0003g03910.t01	AT1G30210.1	18818695
AT4G14700.1	VIT_07s0005g03090.t01	AT3G54710.1	18818695
AT4G14700.1	VIT_18s0001g14540.t01	AT4G16630.1	20706207
AT4G14700.1	VIT_07s0104g00020.t01	AT5G13060.1	18818695
AT4G14700.1	VIT_16s0039g01430.t01	AT5G16690.1	18818695
AT4G14700.1	VIT_16s0039g01440.t01	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g02050.t01	Wine grape	nucleus	89.78	63.88
Solyc03g006420.2.1	Tomato	nucleus	72.91	56.68
KRH23133	Soybean	nucleus	74.15	56.29
PGSC0003DMT400033353	Potato	nucleus, plastid	64.24	55.48
KRH10202	Soybean	nucleus	73.06	55.27
GSMUA_Achr8P31340_001	Banana	nucleus	67.49	54.5
PGSC0003DMT400033355	Potato	cytosol	7.59	53.85
CDY16697	Canola	plastid	67.34	53.77
AT4G14700.1	Thale cress	plastid	67.03	53.52
Bra029471.1-P	Field mustard	plastid	67.18	53.38
CDY62377	Canola	plastid	67.34	53.31
AT4G12620.1	Thale cress	plastid	66.72	53.01
OQU75979	Sorghum	plastid	63.93	50.99
TraesCS7D01G153500.1	Wheat	plastid	63.31	49.34
Zm00001d045080_P001	Maize	plastid	62.23	49.14
TraesCS7A01G151700.1	Wheat	plastid	58.98	48.66
VIT_13s0175g00030.t01	Wine grape	extracellular	11.76	48.41
TraesCS7B01G055600.1	Wheat	nucleus	63.47	46.28
Zm00001d037086_P006	Maize	nucleus, plastid	63.31	46.21
HORVU7Hr1G031190.2	Barley	nucleus	62.85	42.92
VIT_06s0004g06300.t01	Wine grape	plastid	16.25	20.83
HORVU3Hr1G033880.2	Barley	plastid	6.97	17.31

Protein Annotations

Gene3D:1.10.8.1280	MapMan:13.2.1.1.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	InterPro:BAH_dom	ProteinID:CCB43806	ProteinID:CCB43806.1	UniProt:F6GUM9	EMBL:FN594951
GO:GO:0000166	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005524	GO:GO:0046872
InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	InterPro:ORC1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF00628	PFAM:PF01426	PFscan:PS51038	PANTHER:PTHR10763	PANTHER:PTHR10763:SF23	SMART:SM00382
SMART:SM00439	SUPFAM:SSF52540	SUPFAM:SSF57903	UniParc:UPI00021091D6	ArrayExpress:VIT_06s0004g00530	EnsemblPlantsGene:VIT_06s0004g00530
EnsemblPlants:VIT_06s0004g00530.t01	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:705627..713108

Molecular Weight (calculated)

73026.0 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.296

Length

646 amino acids

Sequence
(BLAST)

001: MFQVWKACDD CLGGFHLKCL KPPLKEVPEG DWICQFCEAR KLGKEVVLPN PPKGKKQKRT AREKLLSSDL WAAHIEKYNV QYMERSGWYL LVSGRWYIIP
101: EETAAGRQPH NLRRELYRTN DFADIEMESV IRLCNVMSPK EFTKANNEGD DIFLCEYEYD MHWHSFKRLA EINNGEEGNE EADNDVDWDY GKDSGSDTEE
201: DMEYEEGNVN NLPSGPSPAH AVAANSWKGR IFGLNKIGTK KILGHVRCHK QTELERAKAT LLLTTLPKSL PCRIKEMEEI TAFIKGAICN DQCLGRCLYI
301: HGVPGTGKTM SVLSVMRNLR SEVDAGSIKP YCFVDINGLK LASSENIYRV IYEALSGHRV GWKKALHLLN ERFADESKIA KEEIRPCILL IDELDLLVTR
401: NQSVLYNILD WPTKPHSKLI VIGIANTMDL PEKLLPRISS RMGIQRLCFG PYNYQQLQEI IPSRLQGIDA FERQAIEFAS RTVTAISGDA RRALEICRRA
501: AELADYHIKK LASPPDSSSE GKALVGMAEV EAAIQEMFQA PHIQVMKSSS KLSKIFLVAM VHGLYQTGMV ETTFEKLSVT VSCLCTSNGE KFPGWDTLLE
601: LVVSLVNAES FYVKQELSIG CRSCSSIFQA FALKDDKELP WLAKYL

Best Arabidopsis Sequence Match ( AT4G14700.1 )
(BLAST)

001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL

Arabidopsis Description

ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.