Factsheet for VIT_06s0004g06300.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0035g01840.t01
VIT_12s0057g00240.t01
VIT_13s0019g00800.t01
VIT_13s0320g00010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	VIT_12s0035g01840.t01	AT2G02560.1	20706207
AT2G29680.1	VIT_13s0019g00800.t01	AT2G28740.1	20706207
AT2G29680.1	VIT_13s0320g00010.t01	AT2G31920.1	20706207
AT2G29680.1	VIT_12s0057g00240.t01	AT4G28230.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078033	Potato	cytosol	62.7	59.18
Solyc06g076860.2.1	Tomato	nucleus	61.9	58.65
KRH46438	Soybean	plastid	54.56	58.26
KRG98340	Soybean	mitochondrion, plastid	54.37	57.81
CDY06693	Canola	nucleus	52.78	55.3
AT1G07270.1	Thale cress	plastid	55.16	55.05
CDY02004	Canola	nucleus, plastid	53.17	53.71
TraesCS3B01G400900.1	Wheat	plastid	46.83	53.64
Bra015569.1-P	Field mustard	nucleus	52.38	53.44
AT2G29680.1	Thale cress	plastid	56.75	53.06
CDX95747	Canola	plastid	55.95	52.91
GSMUA_Achr6P33780_001	Banana	nucleus	51.59	52.74
CDY10263	Canola	plastid	52.58	52.17
HORVU3Hr1G084800.19	Barley	plastid	48.02	51.93
EES01777	Sorghum	plastid	50.4	51.63
Zm00001d012320_P002	Maize	plastid	50.0	51.43
Zm00001d042810_P001	Maize	plastid	48.61	50.1
Os01t0856000-02	Rice	nucleus, plastid	49.4	48.35
TraesCS3A01G369000.1	Wheat	plastid	47.62	48.1
TraesCS3D01G362000.1	Wheat	plastid	47.22	47.7
CDY71310	Canola	cytosol	14.68	46.84
CDX94733	Canola	cytosol	13.29	45.89
VIT_06s0004g00530.t01	Wine grape	cytosol	20.83	16.25
VIT_13s0175g00030.t01	Wine grape	extracellular	4.96	15.92
VIT_06s0004g02050.t01	Wine grape	nucleus	22.22	12.33

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.60	EntrezGene:100245101	wikigene:100245101	MapMan:13.2.1.4	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	EMBL:AM459550	ProteinID:CAN65662	ProteinID:CAN65662.1	ProteinID:CCB43492	ProteinID:CCB43492.1
InterPro:Cdc6/18	InterPro:Cdc6_C	UniProt:F6GUT4	EMBL:FN594951	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006270	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009744	GO:GO:0009987	GO:GO:0051301	InterPro:IPR036388
EntrezGene:LOC100245101	wikigene:LOC100245101	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401	PIRSF:PIRSF001767
PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785	SUPFAM:SSF52540	UniParc:UPI0002108C21
ArrayExpress:VIT_06s0004g06300	EnsemblPlantsGene:VIT_06s0004g06300	EnsemblPlants:VIT_06s0004g06300.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_003632136
RefSeq:XP_003632136.1	SEG:seg	:	:	:	:

Description

Cell division control protein [Source:UniProtKB/TrEMBL;Acc:F6GUT4]

Coordinates

chr6:+:7085859..7092094

Molecular Weight (calculated)

55596.6 Da

IEP (calculated)

9.811

GRAVY (calculated)

-0.259

Length

504 amino acids

Sequence
(BLAST)

001: MPSIGAVRSE SSGEVRSGSG STPQKRRSIS GGPISPPSPV KWKSPRRSVN GSPKTPSKEI EKDSDAKATR LHKSPMKNLS EIFLDKSKWN PGDSKQMSAA
101: KEALHVSTVP STVVCREDEQ NRIMDFCKAC IEHEKAGSLY ACGCPGTGKS LSMEKVRRAL VDWAGQAGFQ PPDLLSINCT SLTNTQEIFS KILEKHQPRK
201: KTKSSTSPLQ HLRNIYSKKQ QSSGMKMMLI IADELDYLIT RDRTVLHDLF MLTTLPFSSC ILIGVSNAID LADRFLPKLQ SLNCKPMVVT FRAYSKDQIL
301: KILQQRLMAL PFPVFQPQAL ELCARKVAAA SGDMRKALSV CRSVLEIVEA ELRESVNSLS VSSEKGAFDQ QTLPALDSLT NQEINIVRVD HMATALSKTF
401: RSPIVDTIQS LPQHQQIILC SAVKLFRGGK KDTTVGELNK SYVDICKSVL VPPIGILELS SMCRVLSDQG LLKLGQARED KLKRVTLKVD EADIAFALQV
501: WAQN

Best Arabidopsis Sequence Match ( AT2G29680.2 )
(BLAST)

001: MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SKDQILRILQ ERLVALPFVA FQSNALEICA RKVSAASGDM RKALCVCRSA LEILEIEVRG SIDQEPKGPV PECQVVKMDH MIAALSKTFK
401: SPIVDTIQSL PQHQQIIVCS AAKAFRGSKK DRTIAELNKL YLEICKSSMI TPAGITEFSN MCTVLNDQGI LKLSLARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL

Arabidopsis Description

CDC6Cell division control protein 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:O82387]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.