Factsheet for Bra015569.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	peroxisome
PTS1:	peroxisome
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06693	Canola	nucleus	93.52	96.05
AT1G07270.1	Thale cress	plastid	71.05	69.5
Bra018366.1-P	Field mustard	cytosol, plastid	16.4	60.9
KRH46438	Soybean	plastid	50.2	52.54
VIT_06s0004g06300.t01	Wine grape	plastid	53.44	52.38
KRG98340	Soybean	mitochondrion, plastid	49.6	51.69
TraesCS3B01G400900.1	Wheat	plastid	44.94	50.45
HORVU3Hr1G084800.19	Barley	plastid	45.75	48.5
Solyc06g076860.2.1	Tomato	nucleus	52.02	48.31
PGSC0003DMT400078033	Potato	cytosol	52.02	48.13
GSMUA_Achr6P33780_001	Banana	nucleus	46.96	47.06
TraesCS3A01G369000.1	Wheat	plastid	46.96	46.49
Zm00001d042810_P001	Maize	plastid	45.95	46.42
EES01777	Sorghum	plastid	45.95	46.14
Zm00001d012320_P002	Maize	plastid	45.75	46.12
TraesCS3D01G362000.1	Wheat	plastid	46.36	45.89
Os01t0856000-02	Rice	nucleus, plastid	46.36	44.47
Bra029471.1-P	Field mustard	plastid	20.85	12.67

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.2.1.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra015569	EnsemblPlants:Bra015569.1
EnsemblPlants:Bra015569.1-P	InterPro:Cdc6/18	InterPro:Cdc6_C	GO:GO:0006139	GO:GO:0006259	GO:GO:0006270
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051301	InterPro:IPR036388
UniProt:M4DGE5	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401	PIRSF:PIRSF001767	PANTHER:PTHR10763
SMART:SM01074	SUPFAM:SSF46785	SUPFAM:SSF52540	UniParc:UPI0002544D89	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf

Description

AT1G07270 (E=2e-202) | cell division control protein CDC6b, putative (CDC6b)

Coordinates

chrA10:+:972901..976077

Molecular Weight (calculated)

54898.6 Da

IEP (calculated)

8.483

GRAVY (calculated)

-0.219

Length

494 amino acids

Sequence
(BLAST)

001: MPTIAGSEKS ECIETPRKRK LRSEEVSLLS EDTISTPKKL KSRQRIAVSN LRTPDKEVKQ DSHENLAVDS LSDCLGSESR DEDQMRAVKE ALHVSKAPST
101: IVCREDEHRR VFEFVKGCLD QQKAGSLYIC GCPGTGKSLS IEKVVKQVGD WSKQACLPPV DTLSVNCTSL TKTADIFSKI LEIVEPVKED NCYSSPLHRL
201: QSLFSQKQDS SSRMMLIIAD EMDFLITKDR GVLHDLFMLT IFPFSTCILI GVANAIDLAD RFLPKLKSLN CKPMVITFPA YSKDQILRIL QERLMVLPYV
301: AFQSNALELC ARKVAAASGD MRKALSVCRS AIEILEIDIR GSPGPESQGP TPDNPVVRMD HMTAALSKTF MSPVVDTIQT LPQHQQIIIC SAAKAFRGSK
401: KDATIGELNK LYLEICKSRV ISPAGITEFT NMCTVLNDQG ILKFDQARGN KLKRVSLRVD ESDITFALQE LSSVRRTSSL QWKTSCAKNS RAKM

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.