Factsheet for Os01t0856000-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 15939553

gfp PMID: 15939553 doi

Y Mori, T Yamamoto, N Sakaguchi, T Ishibashi, T Furukawa, Y Kadota, K Kuchitsu, J Hashimoto, S Kimura, K Sakaguchi

Department of Applied Biological Science, Faculty of Science and Technology, Science University of Tokyo, 2641 Yamazaki, Noda-shi, Chiba-ken 278-8510, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0167700-01
Os02t0169800-01
Os09t0553100-00
Os10t0539500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	Os10t0539500-01	AT1G07660.1	20706207
AT2G29680.1	Os02t0167700-01	AT2G02560.1	20706207
AT2G29680.1	Os02t0169800-01	AT2G02560.1	20706207
AT2G29680.1	Os09t0553100-00	AT3G53730.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G400900.1	Wheat	plastid	71.07	83.18
Zm00001d012320_P002	Maize	plastid	75.53	79.39
EES01777	Sorghum	plastid	74.76	78.25
Zm00001d042810_P001	Maize	plastid	73.4	77.3
TraesCS3A01G369000.1	Wheat	plastid	73.98	76.35
TraesCS3D01G362000.1	Wheat	plastid	73.79	76.15
HORVU3Hr1G084800.19	Barley	plastid	68.54	75.75
GSMUA_Achr6P33780_001	Banana	nucleus	50.87	53.14
KRG98340	Soybean	mitochondrion, plastid	48.35	52.53
KRH46438	Soybean	plastid	47.77	52.12
AT1G07270.1	Thale cress	plastid	48.54	49.51
VIT_06s0004g06300.t01	Wine grape	plastid	48.35	49.4
CDY02004	Canola	nucleus, plastid	46.99	48.5
CDY06693	Canola	nucleus	45.24	48.44
PGSC0003DMT400078033	Potato	cytosol	49.51	47.75
Solyc06g076860.2.1	Tomato	nucleus	49.32	47.74
Bra015569.1-P	Field mustard	nucleus	44.47	46.36
CDX95747	Canola	plastid	47.77	46.15
CDY10263	Canola	plastid	44.85	45.47
AT2G29680.1	Thale cress	plastid	47.18	45.08
CDX94733	Canola	cytosol	12.62	44.52
CDY71310	Canola	cytosol	13.59	44.3
Os06t0187100-00	Rice	mitochondrion	8.93	14.89

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.60	MapMan:13.2.1.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:AK107439
EMBL:AK107451	ProteinID:BAD82303.1	ProteinID:BAD82304.1	ProteinID:BAF06759.2	ProteinID:BAS75291.1	ProteinID:BAS75292.1
InterPro:Cdc6/18	InterPro:Cdc6_C	GO:GO:0000166	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006270	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009058	GO:GO:0009452	GO:GO:0009744	GO:GO:0009987	GO:GO:0016740
GO:GO:0046872	GO:GO:0051301	InterPro:IPR036388	EnsemblPlantsGene:Os01g0856000	EnsemblPlants:Os01t0856000-02	InterPro:P-loop_NTPase
PFAM:PF09079	PFAM:PF13401	PIRSF:PIRSF001767	PANTHER:PTHR10763	UniProt:Q5N897	SMART:SM01074
SUPFAM:SSF46785	SUPFAM:SSF52540	UniParc:UPI000049E9F8	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

CELL DIVISION CONTROL 6Similar to CDC6 protein. (Os01t0856000-01);Similar to predicted protein. (Os01t0856000-02)

Coordinates

chr1:+:36952783..36956712

Molecular Weight (calculated)

57226.3 Da

IEP (calculated)

9.069

GRAVY (calculated)

-0.210

Length

515 amino acids

Sequence
(BLAST)

001: MPTLRSATAS ASTAGTASPT AIATPRSAKR RLTSPRRAAG SPDASQFTSP HKSPNVGIVG TPKLLSASPR SSRKRLYGDF VAAEKPKWNP RGKSPESHFS
101: RAQSSDWDLT KEFICSADPA QMQVVKEALH VATVPSCGLV CRDDEQSRVL EFCKGCVEQE RSGSLYVCGC PGTGKTLSIN KVKESVARWA DETGMETPDA
201: LSINCTSLAK THEIFSKILA KFQTRKKATC KLSPLQQLQT MFSHKESAPR RMLLVVVDEM DYLITRDRAV LHDLFMLTTY QFSRCILIGI ANAIDLADRF
301: LPKLESLNCK PLVVTFRAYS KDQISDIIKH RLKVLEYDVF EPLALEFCAR KVAAASGDMR KALGVCRSAV EVFEARLQES SDQEFGLVTF DHMDIALSKA
401: FKSPVVDSIL CLPQHQQMVL CALANTFHHC KKKATTLGEL NKSYIEICRS TQVPAVGMLE FSNMCMVLSD QGFMKLGQSK EDKLRRVMLQ IDSSDITFAF
501: KGNRFFQKCL EQQKF

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.