CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71081
CDX89193
CDX95121
CDY03047
CDY04583
CDY06280
CDY07783
CDY09359
CDY18994
CDY22719
CDY32809
CDY41685
CDY42075
CDY45206
CDY60513
CDY60565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	CDY06280	AT1G07660.1	20706207
AT2G29680.1	CDX95121	AT1G07820.1	20706207
AT2G29680.1	CDY03047	AT2G02560.1	20706207
AT2G29680.1	CDY09359	AT2G02560.1	20706207
AT2G29680.1	CDY41685	AT2G02560.1	20706207
AT2G29680.1	CDY45206	AT2G02560.1	20706207
AT2G29680.1	CDY04583	AT2G28740.1	20706207
AT2G29680.1	CDY42075	AT2G31920.1	20706207
AT2G29680.1	CDY60513	AT2G31920.1	20706207
AT2G29680.1	CDY07783	AT3G45930.1	20706207
AT2G29680.1	CDY22719	AT3G45930.1	20706207
AT2G29680.1	CDY32809	AT3G46320.1	20706207
AT2G29680.1	CDX71081	AT3G53730.1	20706207
AT2G29680.1	CDX89193	AT4G28230.1	20706207
AT2G29680.1	CDY18994	AT4G28230.1	20706207
AT2G29680.1	CDY60565	AT5G59690.1	20706207
AT2G29680.1	CDY32809	AT5G59970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02004	Canola	nucleus, plastid	73.42	23.25
CDX95747	Canola	plastid	72.15	21.39
CDY06693	Canola	nucleus	63.92	21.0
AT2G29680.1	Thale cress	plastid	67.72	19.85
CDY10263	Canola	plastid	60.13	18.7
KRG98340	Soybean	mitochondrion, plastid	48.1	16.03
KRH46438	Soybean	plastid	46.84	15.68
TraesCS3B01G400900.1	Wheat	plastid	42.41	15.23
Zm00001d042810_P001	Maize	plastid	45.57	14.72
VIT_06s0004g06300.t01	Wine grape	plastid	46.84	14.68
Solyc06g076860.2.1	Tomato	nucleus	48.73	14.47
HORVU3Hr1G084800.19	Barley	plastid	42.41	14.38
PGSC0003DMT400078033	Potato	cytosol	48.1	14.23
Zm00001d012320_P002	Maize	plastid	43.67	14.08
EES01777	Sorghum	plastid	43.04	13.82
Os01t0856000-02	Rice	nucleus, plastid	44.3	13.59
TraesCS3D01G362000.1	Wheat	plastid	42.41	13.43
TraesCS3A01G369000.1	Wheat	plastid	41.77	13.23
GSMUA_Achr6P33780_001	Banana	nucleus	39.24	12.58
CDY16697	Canola	plastid	18.35	3.58
CDY62377	Canola	plastid	18.35	3.55
CDX94733	Canola	cytosol	0.63	0.68

Protein Annotations

EnsemblPlants:CDY71310	EnsemblPlantsGene:GSBRNA2T00014039001	Gene3D:1.10.10.10	InterPro:Cdc6_C	InterPro:IPR036388	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	PFAM:PF09079	ProteinID:CDY71310	ProteinID:CDY71310.1
SUPFAM:SSF46785	UniParc:UPI0004EEF7F2	UniProt:A0A078JY45	MapMan:35.1	:	:

Description

BnaAnng36920DBnaAnng36920D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JY45]

Coordinates

chrLK045347:+:1..1822

Molecular Weight (calculated)

17777.9 Da

IEP (calculated)

9.099

GRAVY (calculated)

-0.060

Length

158 amino acids

Sequence
(BLAST)

001: KIENNTRTEL PYVAFQPKAL ELCARYQMMR KALSVCRSAF EILETEVKGF TDPNHKIKIK WLVKMDHMVA ALAKTFKCPV VDTIQALPQH QQVVVCSAAK
101: AFRGSKKDRT IAELNRLYLE ICKSSMITPA GITEFTNMCT VLNDQVITSD VGMKGAYC

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.