Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026274.1-P | Field mustard | nucleus | 96.94 | 97.44 |
| CDY18994 | Canola | nucleus | 95.92 | 96.41 |
| AT4G28230.1 | Thale cress | nucleus | 75.77 | 73.88 |
| KRH30104 | Soybean | nucleus | 35.97 | 42.86 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 50.0 | 42.06 |
| KRH62794 | Soybean | nucleus | 35.46 | 41.62 |
| Solyc07g054690.1.1 | Tomato | extracellular | 47.7 | 39.53 |
| PGSC0003DMT400047304 | Potato | nucleus | 47.45 | 39.32 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 29.34 | 30.83 |
Protein Annotations
| EnsemblPlants:CDX89193 | EnsemblPlantsGene:GSBRNA2T00149370001 | ncoils:Coil | PANTHER:PTHR36386 | ProteinID:CDX89193 | ProteinID:CDX89193.1 |
| SEG:seg | UniParc:UPI0004EED549 | MapMan:35.2 | : | : | : |
Description
BnaA01g17000D
Coordinates
chrLK031858:+:90117..91295
Molecular Weight (calculated)
43796.9 Da
IEP (calculated)
10.454
GRAVY (calculated)
-0.942
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTEHTETL NAPELQIWNN AAFDDGDSNL TSAIEASWSN LNASFDSDCS KENQIPVSVS SSLKSSVSFS TDDPIRCGKV KEKPHKTGKV RHGDIDAEIE
101: EVEKEMNRLS IRLESLRLEK AEQIARSIAI RGRIVPAKFM ESQKPTVKFD TGAKPRTTPR RGVSLGPGEI YSAAKKSETT VTPLQSAQNR RKSCFFKLPG
201: IEEGKKAVTK GRGRSLSPRS RKAKMTAAEK QAATTGGSKR GVKKEESVLS SIQPKKLFKE EEKRKPLKPG RVVASRYSLM SKTAEKDARK RSLPENEEKE
301: NHRSEKRRAS DENRKSEGRV KKRWEIPSEV EVYCSGVTVS DETPIGKELP KIRTLRGRVG ESPRDSGAAK RVSELESKNR DFTFCQLLRF EE
101: EVEKEMNRLS IRLESLRLEK AEQIARSIAI RGRIVPAKFM ESQKPTVKFD TGAKPRTTPR RGVSLGPGEI YSAAKKSETT VTPLQSAQNR RKSCFFKLPG
201: IEEGKKAVTK GRGRSLSPRS RKAKMTAAEK QAATTGGSKR GVKKEESVLS SIQPKKLFKE EEKRKPLKPG RVVASRYSLM SKTAEKDARK RSLPENEEKE
301: NHRSEKRRAS DENRKSEGRV KKRWEIPSEV EVYCSGVTVS DETPIGKELP KIRTLRGRVG ESPRDSGAAK RVSELESKNR DFTFCQLLRF EE
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.