CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX69408
CDX70711
CDX70729
CDX76164
CDX77460
CDX78706
CDX78721
CDX83047
CDX85167
CDX87018
CDX89437
CDX90458
CDX92996
CDX94841
CDY03368
CDY04139
CDY05870
CDY06213
CDY07260
CDY09609
CDY13189
CDY16966
CDY17426
CDY18083
CDY25328
CDY25566
CDY34403
CDY36901
CDY44976
CDY46075	nucleus
CDY47165
CDY58069
CDY58070
CDY63966	nucleus
CDY64587
CDY66197
CDY67496
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	CDY07260	AT1G61870.1	20706207
AT1G15570.1	CDY25328	AT1G61870.1	20706207
AT1G15570.1	CDY47165	AT1G61870.1	20706207
AT1G15570.1	CDY25566	AT1G64180.1	21798944
AT1G15570.1	CDY34403	AT1G64180.1	21798944
AT1G15570.1	CDY46075	AT2G23430.1	20018602
AT1G15570.1	CDY63966	AT2G23430.1	20018602
AT1G15570.1	CDX70711	AT3G11270.1	20706207
AT1G15570.1	CDX78706	AT3G11270.1	20706207
AT1G15570.1	CDY04139	AT3G11270.1	20706207
AT1G15570.1	CDY06213	AT3G11270.1	20706207
AT1G15570.1	CDY17426	AT3G11270.1	20706207
AT1G15570.1	CDX77460	AT3G24140.1	21798944
AT1G15570.1	CDX85167	AT3G24140.1	21798944
AT1G15570.1	CDX92996	AT3G24140.1	21798944
AT1G15570.1	CDX94841	AT3G24140.1	21798944
AT1G15570.1	CDY18083	AT3G24140.1	21798944
AT1G15570.1	CDY64587	AT3G24140.1	21798944
AT1G15570.1	CDY36901	AT3G48150.1	21798944
AT1G15570.1	CDY44976	AT3G48150.1	21798944
AT1G15570.1	CDY58069	AT3G48150.1	21798944
AT1G15570.1	CDY58070	AT3G48150.1	21798944
AT1G15570.1	CDY70805	AT3G48150.1	21798944
AT1G15570.1	CDX68497	AT3G48750.1	16415207
AT1G15570.1	CDX83047	AT3G48750.1	16415207
AT1G15570.1	CDX87018	AT3G48750.1	16415207
AT1G15570.1	CDY05870	AT3G48750.1	16415207
AT1G15570.1	CDY66197	AT3G48750.1	16415207
AT1G15570.1	CDY67496	AT3G48750.1	16415207
AT1G15570.1	CDX76164	AT3G54180.1	20706207
AT1G15570.1	CDY13189	AT3G54180.1	20706207
AT1G15570.1	CDX90458	AT4G17680.1	21798944
AT1G15570.1	CDY09609	AT4G17680.1	21798944
AT1G15570.1	CDX89437	AT4G25200.1	21798944
AT1G15570.1	CDY03368	AT4G25200.1	21798944
AT1G15570.1	CDX69408	AT5G16970.1	20706207
AT1G15570.1	CDX70729	AT5G16970.1	20706207
AT1G15570.1	CDX78721	AT5G16970.1	20706207
AT1G15570.1	CDY16966	AT5G16970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026756.1-P	Field mustard	plastid	97.31	97.31
CDX81722	Canola	nucleus, plastid	93.64	95.04
CDY66415	Canola	nucleus	85.57	80.65
CDY36574	Canola	mitochondrion, nucleus	85.33	80.05
CDX96836	Canola	nucleus, plastid	82.89	77.05
AT1G15570.1	Thale cress	nucleus, plastid	80.2	72.89
CDY48212	Canola	nucleus	64.06	69.5
CDY61993	Canola	nucleus	63.33	68.7
CDX67944	Canola	plastid	68.22	64.58
CDX79389	Canola	plastid	66.99	63.28
CDY38664	Canola	nucleus, plastid	69.93	62.86
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	37.9	62.75
CDY37592	Canola	mitochondrion, plastid	69.44	62.14
CDY39984	Canola	plastid	67.24	61.38
CDX87305	Canola	plastid	68.7	60.82
VIT_09s0002g05240.t01	Wine grape	nucleus	62.1	51.84
CDY06752	Canola	nucleus	34.47	49.47
KRH47513	Soybean	nucleus	56.97	48.95
Solyc03g120440.1.1	Tomato	nucleus, plastid	52.81	47.16
CDX97090	Canola	nucleus	49.88	46.79
KRH44391	Soybean	nucleus	53.79	46.71
PGSC0003DMT400006576	Potato	nucleus	52.81	46.65
CDX87087	Canola	plastid	46.94	46.04
CDX69768	Canola	nucleus, plastid	49.14	46.0
CDY22369	Canola	nucleus	39.36	45.87
CDY17091	Canola	nucleus	38.88	44.41
CDY17037	Canola	nucleus, plastid	38.88	43.68
Os12t0502300-01	Rice	nucleus, plastid	52.08	43.47
CDY47595	Canola	nucleus, plastid	39.12	43.13
CDY23653	Canola	nucleus	37.41	42.86
OQU77084	Sorghum	nucleus	50.86	42.62
CDY66770	Canola	nucleus	37.65	42.54
CDX88368	Canola	plastid	39.12	42.11
CDY47596	Canola	nucleus	37.16	41.87
CDY06757	Canola	nucleus, plastid	37.16	41.87
CDY62408	Canola	nucleus, plasma membrane, plastid	21.52	41.71
CDY17039	Canola	nucleus	36.92	41.6
TraesCSU01G054300.1	Wheat	nucleus	50.86	41.52
CDX87520	Canola	nucleus	38.88	41.19
TraesCS3D01G529100.1	Wheat	plastid	50.86	41.19
TraesCS3A01G523600.1	Wheat	plastid	50.86	41.03
CDY41784	Canola	plastid	33.99	40.88
HORVU3Hr1G114440.21	Barley	nucleus, plastid	50.61	40.83
KXG23504	Sorghum	mitochondrion, nucleus	47.92	40.58
TraesCS5D01G121100.2	Wheat	plastid	50.12	40.35
TraesCS5B01G114300.2	Wheat	plastid	49.63	40.04
TraesCS5A01G108500.2	Wheat	plastid	49.63	39.96
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	47.19	39.79
Zm00001d014756_P006	Maize	nucleus, plastid	50.61	39.73
GSMUA_Achr3P25340_001	Banana	nucleus	52.57	39.67
CDX85466	Canola	plastid	40.34	39.1
CDY02719	Canola	plastid	40.1	38.23
CDX92090	Canola	mitochondrion, nucleus	33.01	37.82
CDY31481	Canola	nucleus	19.07	35.94
CDY25649	Canola	plastid	38.14	35.7
CDY65994	Canola	plastid	38.63	35.67
CDY29184	Canola	nucleus	30.07	29.36
CDY30357	Canola	nucleus	29.34	29.34
CDY26816	Canola	nucleus	29.1	29.24
CDY07838	Canola	nucleus	29.83	29.19
CDX72551	Canola	nucleus	28.61	29.18
CDY62475	Canola	nucleus	24.94	29.06
CDY69551	Canola	nucleus	24.94	28.73
CDY67210	Canola	nucleus	28.36	28.57
CDY33634	Canola	nucleus	28.36	28.43
CDY29520	Canola	nucleus	28.12	28.05
CDX96631	Canola	nucleus	28.12	28.05
CDX85942	Canola	nucleus	27.87	27.94
CDX88261	Canola	nucleus	28.61	27.21
CDX87612	Canola	nucleus	28.61	27.15
CDX69311	Canola	nucleus	27.14	26.49
CDX68105	Canola	nucleus	25.18	26.08
CDX75659	Canola	nucleus	27.14	25.93
CDX80988	Canola	plastid	26.89	25.7
CDY11354	Canola	plastid	26.89	25.4
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	47.43	19.62
CDY33338	Canola	nucleus	25.43	17.81
CDY14091	Canola	plastid	26.89	16.77
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	24.94	16.75
CDX96819	Canola	nucleus	25.67	16.28
CDX83953	Canola	nucleus	25.18	15.73
CDY04980	Canola	nucleus	27.14	15.46

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	GO:A0A078IV63	UniProt:A0A078IV63	EnsemblPlants:CDY53304	ProteinID:CDY53304
ProteinID:CDY53304.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00010416001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0004EF04EC	SEG:seg	:	:	:	:

Description

BnaA09g56610DBnaA09g56610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV63]

Coordinates

chrLK033186:+:26053..27917

Molecular Weight (calculated)

46884.1 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.352

Length

409 amino acids

Sequence
(BLAST)

001: MVQENAVSRP FTRAFASSLR ASTTRNQQRA NRKRPASEED KNITAHTPNK KKKRVVLGDI SNVGFNAAKL EEAKNIIKQV KKESVDTSEV TDLQSKTHAK
101: AEEVSNDTAD NCKSDVIGTS TSLDFPKVID IDSDDKDPLL CCLYAPEIYH NLRVSELKRR PVPDFMERTQ KDVTHSMRGI LVDWLVEVSE EYTLVPDTLY
201: LTVYLIDWFL HGNHIERQNL QLLGITCMLI ASKYEEICAP RVEEFCLMTD NTYTRDQVLE MENQVLAHFS FQIYTPTPKT FLRRFLRAAA QASSYLSQRR
301: RELEFLASYL TELTLIDCRF LKFLPSVIAA SAVFLAKWTL DQSNHPWNLT LEHYTTYKAS DLKASVHALQ DLQLNTRGCP LSAIRMKYRQ EKFKSVAVLI
401: SPKLLDTLF

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.