Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY37592 | Canola | mitochondrion, plastid | 96.7 | 96.28 |
CDX79389 | Canola | plastid | 79.78 | 83.83 |
CDX67944 | Canola | plastid | 79.34 | 83.56 |
CDY39984 | Canola | plastid | 81.32 | 82.59 |
CDX87305 | Canola | plastid | 82.64 | 81.39 |
AT1G80370.1 | Thale cress | plastid | 80.22 | 79.18 |
CDY48212 | Canola | nucleus | 64.18 | 77.45 |
CDY61993 | Canola | nucleus | 63.96 | 77.19 |
CDY66415 | Canola | nucleus | 67.03 | 70.28 |
CDY53304 | Canola | plastid | 62.86 | 69.93 |
CDY36574 | Canola | mitochondrion, nucleus | 66.59 | 69.5 |
CDX81722 | Canola | nucleus, plastid | 61.1 | 68.98 |
CDX96836 | Canola | nucleus, plastid | 66.37 | 68.64 |
GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 34.73 | 63.97 |
VIT_09s0002g05240.t01 | Wine grape | nucleus | 58.24 | 54.08 |
KRH47513 | Soybean | nucleus | 54.07 | 51.68 |
KRH44391 | Soybean | nucleus | 51.87 | 50.11 |
PGSC0003DMT400006576 | Potato | nucleus | 49.89 | 49.03 |
Solyc03g120440.1.1 | Tomato | nucleus, plastid | 48.79 | 48.47 |
CDX87087 | Canola | plastid | 44.18 | 48.2 |
CDY06752 | Canola | nucleus | 30.11 | 48.07 |
CDX97090 | Canola | nucleus | 45.27 | 47.25 |
CDX69768 | Canola | nucleus, plastid | 44.62 | 46.45 |
Os12t0502300-01 | Rice | nucleus, plastid | 48.13 | 44.69 |
OQU77084 | Sorghum | nucleus | 47.69 | 44.47 |
CDY22369 | Canola | nucleus | 34.29 | 44.44 |
TraesCS5D01G121100.2 | Wheat | plastid | 47.91 | 42.91 |
TraesCS5B01G114300.2 | Wheat | plastid | 47.69 | 42.8 |
TraesCSU01G054300.1 | Wheat | nucleus | 47.03 | 42.71 |
CDY17091 | Canola | nucleus | 33.41 | 42.46 |
Zm00001d014756_P006 | Maize | nucleus, plastid | 48.57 | 42.42 |
TraesCS3A01G523600.1 | Wheat | plastid | 47.25 | 42.41 |
TraesCS5A01G108500.2 | Wheat | plastid | 47.25 | 42.32 |
TraesCS3D01G529100.1 | Wheat | plastid | 46.81 | 42.18 |
CDY17037 | Canola | nucleus, plastid | 33.63 | 42.03 |
HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 46.59 | 41.81 |
GSMUA_Achr3P25340_001 | Banana | nucleus | 49.45 | 41.51 |
CDY47595 | Canola | nucleus, plastid | 33.63 | 41.24 |
CDX88368 | Canola | plastid | 34.29 | 41.05 |
CDY66770 | Canola | nucleus | 32.53 | 40.88 |
CDY62408 | Canola | nucleus, plasma membrane, plastid | 18.9 | 40.76 |
CDY23653 | Canola | nucleus | 31.87 | 40.62 |
KXG23504 | Sorghum | mitochondrion, nucleus | 43.08 | 40.58 |
CDX85466 | Canola | plastid | 37.58 | 40.52 |
CDY47596 | Canola | nucleus | 32.09 | 40.22 |
CDY17039 | Canola | nucleus | 32.09 | 40.22 |
CDY06757 | Canola | nucleus, plastid | 32.09 | 40.22 |
CDX87520 | Canola | nucleus | 34.07 | 40.16 |
Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 42.42 | 39.79 |
CDY02719 | Canola | plastid | 37.14 | 39.39 |
CDY41784 | Canola | plastid | 28.79 | 38.53 |
CDY31481 | Canola | nucleus | 18.02 | 37.79 |
CDY65994 | Canola | plastid | 36.48 | 37.47 |
CDY25649 | Canola | plastid | 35.6 | 37.07 |
CDX92090 | Canola | mitochondrion, nucleus | 29.01 | 36.97 |
CDX72551 | Canola | nucleus | 26.59 | 30.17 |
CDX85942 | Canola | nucleus | 26.59 | 29.66 |
CDY67210 | Canola | nucleus | 26.37 | 29.56 |
CDY33634 | Canola | nucleus | 26.15 | 29.17 |
CDX96631 | Canola | nucleus | 26.15 | 29.02 |
CDY30357 | Canola | nucleus | 25.71 | 28.61 |
CDY62475 | Canola | nucleus | 21.98 | 28.49 |
CDY69551 | Canola | nucleus | 22.2 | 28.45 |
CDY26816 | Canola | nucleus | 25.27 | 28.26 |
CDY29184 | Canola | nucleus | 25.93 | 28.16 |
CDY29520 | Canola | nucleus | 25.27 | 28.05 |
CDY07838 | Canola | nucleus | 25.71 | 27.99 |
CDX68105 | Canola | nucleus | 23.96 | 27.59 |
CDX88261 | Canola | nucleus | 25.93 | 27.44 |
CDX87612 | Canola | nucleus | 25.93 | 27.38 |
CDX69311 | Canola | nucleus | 23.74 | 25.78 |
CDY11354 | Canola | plastid | 24.18 | 25.4 |
CDX80988 | Canola | plastid | 23.52 | 25.0 |
CDX75659 | Canola | nucleus | 23.52 | 25.0 |
CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 44.62 | 20.53 |
CDY33338 | Canola | nucleus | 25.49 | 19.86 |
CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 25.05 | 18.72 |
CDX96819 | Canola | nucleus | 25.05 | 17.67 |
CDX83953 | Canola | nucleus | 24.4 | 16.95 |
CDY14091 | Canola | plastid | 23.74 | 16.46 |
CDY04980 | Canola | nucleus | 24.18 | 15.32 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | GO:A0A078HMT0 | UniProt:A0A078HMT0 | EnsemblPlants:CDY38664 | ProteinID:CDY38664 |
ProteinID:CDY38664.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00066388001 | PFAM:PF00134 | PFAM:PF02984 |
PIRSF:PIRSF001771 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF346 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
UniParc:UPI0004EEB69E | SEG:seg | : | : | : | : |
Description
BnaC02g23150DBnaC02g23150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMT0]
Coordinates
chrLK032429:+:130110..133073
Molecular Weight (calculated)
50999.1 Da
IEP (calculated)
8.634
GRAVY (calculated)
-0.238
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKEKAVSGN TTIPLYARPV TRALASALRA SSKLITSSDV AAITLINQGM VLRANSKRTA LDDRTTNAPK KRAVLKDISN VTCENSYTTS CVSAAKTQVE
101: NVKQIEKGRA GSSKVAPSST TSEVTDNAKS QVVSDSAGVS LSGCTGRNEA SCSFSRLPPR PPVRSTSSTV ETSSPKFIDI DSDVKDPLLC SLYAPEIHYN
201: LRVAELKRRP CPDFMERTQR DVTQTMRGIL VDWLVEVSEE YTLVPDTLYL TVYLIDWFLQ GNYMERQRLQ LLGVTCMLIA SKYEEINAPR IEEFCSITDN
301: TYTRDAVLEM ESQVLKHFSF QIYTPTSKTF LRRFLRAAQA SHLMPSVEME FLANYLTELT LVEYEFLKYL PSVIAASAVF LAKWTVNQSS HPWNPTLEHY
401: TTYKASDLKA CVEALQELQL NTKGCPLNSI RMKYRQDKFK SVAVFTSPKI PDRLF
101: NVKQIEKGRA GSSKVAPSST TSEVTDNAKS QVVSDSAGVS LSGCTGRNEA SCSFSRLPPR PPVRSTSSTV ETSSPKFIDI DSDVKDPLLC SLYAPEIHYN
201: LRVAELKRRP CPDFMERTQR DVTQTMRGIL VDWLVEVSEE YTLVPDTLYL TVYLIDWFLQ GNYMERQRLQ LLGVTCMLIA SKYEEINAPR IEEFCSITDN
301: TYTRDAVLEM ESQVLKHFSF QIYTPTSKTF LRRFLRAAQA SHLMPSVEME FLANYLTELT LVEYEFLKYL PSVIAASAVF LAKWTVNQSS HPWNPTLEHY
401: TTYKASDLKA CVEALQELQL NTKGCPLNSI RMKYRQDKFK SVAVFTSPKI PDRLF
001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
Arabidopsis Description
CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.