Factsheet for VIT_09s0002g05240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01
VIT_02s0025g00840.t01
VIT_03s0017g00150.t01
VIT_05s0029g00040.t01	nucleus
VIT_05s0029g00050.t01
VIT_06s0061g00810.t01
VIT_07s0005g03000.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_08s0056g00210.t01
VIT_10s0116g00030.t01
VIT_10s0116g00090.t01
VIT_12s0035g01120.t01
VIT_12s0035g01130.t01
VIT_15s0045g00310.t01
VIT_16s0022g00510.t01
VIT_18s0041g01900.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	VIT_12s0035g01120.t01	AT1G57720.1	20706207
AT1G15570.1	VIT_12s0035g01130.t01	AT1G57720.1	20706207
AT1G15570.1	VIT_18s0041g01900.t01	AT1G57720.1	20706207
AT1G15570.1	VIT_10s0116g00030.t01	AT1G61870.1	20706207
AT1G15570.1	VIT_10s0116g00090.t01	AT1G61870.1	20706207
AT1G15570.1	VIT_02s0025g00840.t01	AT1G64180.1	21798944
AT1G15570.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT1G15570.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT1G15570.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT1G15570.1	VIT_05s0029g00050.t01	AT3G24140.1	21798944
AT1G15570.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT1G15570.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT1G15570.1	VIT_15s0045g00310.t01	AT3G48750.1	16415207
AT1G15570.1	VIT_08s0056g00210.t01	AT3G54180.1	20706207
AT1G15570.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944
AT1G15570.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT1G80370.1	VIT_05s0029g00040.t01	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	34.08	67.61
Bra031463.1-P	Field mustard	nucleus	47.55	63.14
Bra000822.1-P	Field mustard	nucleus	48.57	63.13
CDY61993	Canola	nucleus	47.96	62.33
Bra026756.1-P	Field mustard	plastid	51.84	62.1
CDY53304	Canola	plastid	51.84	62.1
CDY48212	Canola	nucleus	47.76	62.07
CDX81722	Canola	nucleus, plastid	50.82	61.79
CDY66415	Canola	nucleus	53.27	60.14
CDY36574	Canola	mitochondrion, nucleus	53.06	59.63
KRH47513	Soybean	nucleus	57.14	58.82
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	47.96	58.6
CDY38664	Canola	nucleus, plastid	54.08	58.24
AT1G15570.1	Thale cress	nucleus, plastid	53.47	58.22
AT1G80370.1	Thale cress	plastid	54.49	57.92
Bra008477.1-P	Field mustard	plastid	53.88	57.77
CDY37592	Canola	mitochondrion, plastid	53.88	57.77
CDY39984	Canola	plastid	52.65	57.59
KRH44391	Soybean	nucleus	54.69	56.9
CDX96836	Canola	nucleus, plastid	51.02	56.82
CDX67944	Canola	plastid	50.0	56.71
Bra016654.1-P	Field mustard	nucleus, plastid	51.22	56.4
Bra003563.1-P	Field mustard	plastid	49.59	56.25
Bra026120.1-P	Field mustard	nucleus	53.47	56.22
CDX79389	Canola	plastid	49.59	56.12
Solyc03g120440.1.1	Tomato	nucleus, plastid	52.45	56.11
CDX87305	Canola	plastid	52.86	56.06
PGSC0003DMT400006576	Potato	nucleus	52.65	55.72
Bra035186.1-P	Field mustard	plastid	52.45	55.63
Os12t0502300-01	Rice	nucleus, plastid	52.45	52.45
OQU77084	Sorghum	nucleus	49.39	49.59
KXG23504	Sorghum	mitochondrion, nucleus	48.57	49.28
TraesCS5B01G114300.2	Wheat	plastid	50.82	49.11
TraesCSU01G054300.1	Wheat	nucleus	50.2	49.1
TraesCS5D01G121100.2	Wheat	plastid	50.82	49.02
TraesCS3D01G529100.1	Wheat	plastid	50.41	48.91
TraesCS3A01G523600.1	Wheat	plastid	50.41	48.72
TraesCS5A01G108500.2	Wheat	plastid	50.0	48.23
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	35.71	47.95
HORVU3Hr1G114440.21	Barley	nucleus, plastid	49.59	47.93
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	46.33	46.8
Zm00001d014756_P006	Maize	nucleus, plastid	49.18	46.26
GSMUA_Achr3P25340_001	Banana	nucleus	51.02	46.13
VIT_03s0091g00280.t01	Wine grape	nucleus	29.8	42.82
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	32.04	42.43
VIT_18s0001g02060.t01	Wine grape	plastid	38.78	38.38
VIT_18s0001g14170.t01	Wine grape	nucleus	26.33	29.25
VIT_06s0009g02090.t01	Wine grape	nucleus	23.47	27.51
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	23.47	27.12
VIT_08s0040g00930.t01	Wine grape	nucleus	24.08	26.05
VIT_13s0067g01420.t01	Wine grape	nucleus	24.08	25.54
VIT_19s0085g00690.t01	Wine grape	nucleus	25.51	20.7

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100254892	wikigene:100254892	MapMan:13.1.1.1.1	EMBL:AM471814	ProteinID:CAN63857
ProteinID:CAN63857.1	ProteinID:CBI36198	ProteinID:CBI36198.3	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	UniProt:D7U0Q2	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006506	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016758	GO:GO:0019538	EntrezGene:LOC100254892	wikigene:LOC100254892	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI00019840CF	ArrayExpress:VIT_09s0002g05240	EnsemblPlantsGene:VIT_09s0002g05240	EnsemblPlants:VIT_09s0002g05240.t01	RefSeq:XP_002280592
RefSeq:XP_002280592.1	RefSeq:XP_010654712.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:4901208..4911414

Molecular Weight (calculated)

55281.1 Da

IEP (calculated)

8.146

GRAVY (calculated)

-0.392

Length

490 amino acids

Sequence
(BLAST)

001: MEKENWATAN AEELTTRVTR SRAATYRASK QMLPKNASMP QEQKRTSQSN LKRPALEEKN NAASATTAPQ CKKRAVLKDV ANICCENLYM NCIDATKIQK
101: RNSKQARKGW VMLPKVAPSV TVEISLLSAD PKATVAQEVE KQEIEPEVIC LTIDGNLPSQ LTSRTTLRKC GIADNQVEKH CSEIASQLHS SSNEAEKGSF
201: DGKLTTSSNP DVKDIDSDDK DPQLCSLYAP EIYNNLHVAE LNRRPCSNFM ETVQRDITQS MRGILVDWLV EASEEYKLVP DTLYLTVHLI DWFLSQNYIE
301: RQKLQLLGIT CMLIASKYEE ICAPRVEEFC CITDNTYSRG EVVKMESQVL NYFGFKIFAP TAKTFLRRFL RAAQASYKNP SLELEYLGNY LAELTLIDYG
401: CLKYLPSIIA ASAVFLARWT LDQSGHPWNP TLEHYTRYKA SDLKTAVFAL QDLQLNTSGC PLNAIRGKYR QNKFKSVASL SSPKLLQTLF

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.