Factsheet for Bra003563.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005565.1-P	nucleus
Bra021808.1-P	nucleus
Bra022897.1-P	nucleus
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80370.1	Bra039199.1-P	AT2G23430.1	20018602
AT1G80370.1	Bra005565.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra021808.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra022897.1-P	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67944	Canola	plastid	96.99	96.99
Bra008477.1-P	Field mustard	plastid	83.56	78.99
Bra000822.1-P	Field mustard	nucleus	67.36	77.19
Bra035186.1-P	Field mustard	plastid	81.71	76.41
Bra031463.1-P	Field mustard	nucleus	64.81	75.88
AT1G80370.1	Thale cress	plastid	79.86	74.84
Bra026756.1-P	Field mustard	plastid	64.12	67.73
Bra016654.1-P	Field mustard	nucleus, plastid	67.82	65.84
Bra026120.1-P	Field mustard	nucleus	69.91	64.81
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	36.57	63.97
VIT_09s0002g05240.t01	Wine grape	nucleus	56.25	49.59
KRH47513	Soybean	nucleus	53.47	48.53
KRH44391	Soybean	nucleus	51.39	47.13
PGSC0003DMT400006576	Potato	nucleus	49.77	46.44
Solyc03g120440.1.1	Tomato	nucleus, plastid	49.07	46.29
OQU77084	Sorghum	nucleus	50.0	44.26
Bra008973.1-P	Field mustard	nucleus, plastid	44.68	44.16
Bra033658.1-P	Field mustard	nucleus	36.34	44.1
Os12t0502300-01	Rice	nucleus, plastid	49.31	43.47
TraesCS5D01G121100.2	Wheat	plastid	49.31	41.93
TraesCS5B01G114300.2	Wheat	plastid	49.07	41.81
Bra040710.1-P	Field mustard	nucleus	35.88	41.78
TraesCS5A01G108500.2	Wheat	plastid	48.84	41.54
TraesCSU01G054300.1	Wheat	nucleus	48.15	41.52
Bra040792.1-P	Field mustard	nucleus, plastid	34.95	41.48
TraesCS3A01G523600.1	Wheat	plastid	48.61	41.42
Zm00001d014756_P006	Maize	nucleus, plastid	49.77	41.27
TraesCS3D01G529100.1	Wheat	plastid	48.15	41.19
HORVU3Hr1G114440.21	Barley	nucleus, plastid	48.15	41.03
KXG23504	Sorghum	mitochondrion, nucleus	45.83	40.99
Bra032220.1-P	Field mustard	nucleus	33.56	40.62
Bra040793.1-P	Field mustard	nucleus	34.03	40.5
GSMUA_Achr3P25340_001	Banana	nucleus	50.69	40.41
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	44.91	40.0
Bra040753.1-P	Field mustard	nucleus, plastid	33.33	39.67
Bra015671.1-P	Field mustard	plastid	35.19	39.38
Bra023606.1-P	Field mustard	plastid	37.73	38.9
Bra032202.1-P	Field mustard	plastid	35.88	36.73
Bra022173.1-P	Field mustard	nucleus, plastid	30.32	34.75
Bra017726.1-P	Field mustard	nucleus	27.55	29.31
Bra016460.1-P	Field mustard	nucleus	26.85	28.29
Bra003727.1-P	Field mustard	nucleus	25.0	28.2
Bra037265.1-P	Field mustard	nucleus	26.62	28.12
Bra024504.1-P	Field mustard	nucleus	27.08	27.92
Bra002046.1-P	Field mustard	nucleus	25.23	27.74
Bra025831.1-P	Field mustard	nucleus	26.16	27.56
Bra015762.1-P	Field mustard	nucleus	27.08	27.15
Bra028741.1-P	Field mustard	nucleus	25.23	26.27
Bra005880.1-P	Field mustard	nucleus, plastid	25.0	26.09
Bra011769.1-P	Field mustard	nucleus	25.0	25.23
Bra026065.1-P	Field mustard	nucleus	25.46	21.74
Bra036544.1-P	Field mustard	nucleus	46.3	20.26
Bra016640.1-P	Field mustard	nucleus	25.46	16.79

Protein Annotations

EnsemblPlants:Bra003563.1	EnsemblPlants:Bra003563.1-P	EnsemblPlantsGene:Bra003563	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00025412FA	UniProt:M4CH80	MapMan:13.1.1.1.1	:

Description

AT1G15570 (E=2e-149) CYCA2;3 | CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator

Coordinates

chrA07:+:13805728..13807646

Molecular Weight (calculated)

48747.6 Da

IEP (calculated)

9.156

GRAVY (calculated)

-0.284

Length

432 amino acids

Sequence
(BLAST)

001: MGNEKAVSGN TIPLHPRPIT RALARASSNL TTSSEGAVAT TLINNQGRVL RANSKRTASD DKNANAPKRR AVLNDITNVA CENKIQIKKG RASSSRVTNA
101: EVQVVCKGTN EASSCSFTEK PSSKLPPRPP GRSTSTVKRI CVGGSSTVAS IPKFIDIDSD VKDHLLCSLY APEIHYNMRV AELKRRPSPD FMERTQRDVT
201: KTMRGILVDW LVEVSEEYTL VPDTLYLTVY LIDWFLHGNY IERQRLQLLG VTCMLIASKY EEIYAPRIEE FCFITDNTYT RDQVLEMESQ VLKHFSFQIY
301: TPTSKTFLRR FLRAAQASHV MPSVEMEFLA NYLTELTLVE CEFLKFLPSV IAASAVFLAK WTMNQSSHPW NATLEHYTTY KASDLKACVQ ALQELQLNTK
401: GCPLNSIRMK YKQDKFKSVA VFTSPELPDR LF

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.