Factsheet for Bra040710.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06752	Canola	nucleus	76.55	99.65
Bra040792.1-P	Field mustard	nucleus, plastid	85.98	87.64
AT1G47230.2	Thale cress	nucleus, plastid	78.98	79.19
Bra032220.1-P	Field mustard	nucleus	70.62	73.39
Bra040753.1-P	Field mustard	nucleus, plastid	69.81	71.35
Bra040793.1-P	Field mustard	nucleus	68.19	69.7
Bra033658.1-P	Field mustard	nucleus	66.31	69.1
OQU91386	Sorghum	nucleus	42.32	60.15
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	58.76	59.73
KRH52056	Soybean	nucleus	33.96	59.72
PGSC0003DMT400055428	Potato	nucleus	57.14	57.61
Solyc04g078310.2.1	Tomato	nucleus	57.41	57.41
Solyc12g088530.1.1	Tomato	nucleus	53.64	56.21
PGSC0003DMT400030222	Potato	nucleus	53.64	56.21
GSMUA_Achr10P...	Banana	nucleus	47.71	55.84
KRH15427	Soybean	nucleus, plastid	54.45	55.49
KRH05614	Soybean	nucleus	54.72	55.31
PGSC0003DMT400030176	Potato	nucleus	52.83	55.06
KRH61375	Soybean	nucleus	48.25	54.74
Solyc12g088520.1.1	Tomato	nucleus	52.29	54.65
Solyc12g088470.1.1	Tomato	nucleus	51.48	53.06
Solyc12g088500.1.1	Tomato	nucleus	50.13	52.54
KRH61369	Soybean	nucleus	46.09	52.29
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	39.89	51.75
TraesCS4D01G076900.1	Wheat	nucleus	51.48	51.62
KRH61371	Soybean	nucleus	48.52	51.58
KRH52055	Soybean	nucleus	49.6	51.4
GSMUA_Achr6P11130_001	Banana	nucleus	53.91	51.15
TraesCS4B01G078300.1	Wheat	nucleus	50.67	50.67
HORVU4Hr1G013320.1	Barley	nucleus	50.94	50.67
TraesCS5B01G078200.1	Wheat	plastid	51.21	50.4
Zm00001d033365_P002	Maize	nucleus	50.4	50.27
TraesCS5A01G072000.1	Wheat	plastid	50.94	50.27
TraesCS5D01G084700.1	Wheat	nucleus	51.21	50.26
TraesCS4A01G236700.2	Wheat	plastid	50.67	50.13
KRH61373	Soybean	nucleus, plastid	49.6	49.07
GSMUA_Achr2P21520_001	Banana	nucleus	46.36	47.78
Os12t0581800-01	Rice	nucleus, plastid	49.06	47.27
TraesCS4D01G253200.1	Wheat	nucleus	31.0	47.13
Zm00001d013744_P001	Maize	nucleus	45.28	47.06
Zm00001d030849_P001	Maize	nucleus	50.13	43.97
EES16237	Sorghum	nucleus, plastid	49.87	43.22
Zm00001d041334_P001	Maize	nucleus, plastid	48.79	41.42
HORVU5Hr1G018820.2	Barley	nucleus, plastid	50.67	41.41
TraesCS4B01G254000.1	Wheat	nucleus	41.51	40.96
TraesCS4D01G253900.1	Wheat	nucleus	41.78	40.79
Bra031463.1-P	Field mustard	nucleus	40.43	40.65
Bra000822.1-P	Field mustard	nucleus	41.24	40.58
TraesCS4A01G050700.1	Wheat	nucleus	40.97	40.0
Bra026756.1-P	Field mustard	plastid	43.94	39.85
TraesCS4A01G051300.1	Wheat	nucleus	36.39	39.36
TraesCS4B01G253100.1	Wheat	nucleus	35.85	39.0
EER95303	Sorghum	nucleus, plastid	39.89	38.85
Bra015671.1-P	Field mustard	plastid	39.08	37.56
Bra003563.1-P	Field mustard	plastid	41.78	35.88
Bra016654.1-P	Field mustard	nucleus, plastid	42.59	35.51
Bra023606.1-P	Field mustard	plastid	39.62	35.08
Bra022173.1-P	Field mustard	nucleus, plastid	35.31	34.75
Bra008973.1-P	Field mustard	nucleus, plastid	40.7	34.55
HORVU4Hr1G069310.3	Barley	nucleus	38.27	34.22
Bra032202.1-P	Field mustard	plastid	38.81	34.12
Bra026120.1-P	Field mustard	nucleus	42.59	33.91
Bra008477.1-P	Field mustard	plastid	41.51	33.7
Bra035186.1-P	Field mustard	plastid	40.97	32.9
Os03t0607600-00	Rice	nucleus	49.06	29.93
Bra002046.1-P	Field mustard	nucleus	31.0	29.26
Zm00001d048127_P001	Maize	plastid	37.47	29.02
Bra024504.1-P	Field mustard	nucleus	32.34	28.64
Bra017726.1-P	Field mustard	nucleus	31.27	28.57
Os03t0208700-00	Rice	nucleus	31.0	28.12
Bra037265.1-P	Field mustard	nucleus	30.46	27.63
Bra005880.1-P	Field mustard	nucleus, plastid	30.73	27.54
Bra028741.1-P	Field mustard	nucleus	30.46	27.23
Bra003727.1-P	Field mustard	nucleus	26.42	25.59
Bra011769.1-P	Field mustard	nucleus	29.11	25.23
Bra025831.1-P	Field mustard	nucleus	27.76	25.12
Bra016460.1-P	Field mustard	nucleus	27.76	25.12
Bra015762.1-P	Field mustard	nucleus	28.57	24.59
Bra026065.1-P	Field mustard	nucleus	25.34	18.58
Bra036544.1-P	Field mustard	nucleus	41.51	15.6
Bra016640.1-P	Field mustard	nucleus	26.15	14.81
Os03t0208800-00	Rice	nucleus	14.82	13.85

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra040710	EnsemblPlants:Bra040710.1	EnsemblPlants:Bra040710.1-P	InterPro:Cyclin-A_plant
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	UniProt:M4FHY1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF270	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI000253E7D7	SEG:seg	:	:	:	:

Description

AT1G47230 (E=2e-161) CYCA3;4 | cyclin, putative

Coordinates

chrScaffold000238:+:4988..6616

Molecular Weight (calculated)

42303.5 Da

IEP (calculated)

8.082

GRAVY (calculated)

-0.156

Length

371 amino acids

Sequence
(BLAST)

001: MSENTRMTRA AVKRKASTAF ARADEITVSK KRVVLGELTN VAVPNQEREI HKPKSTLIPA KKQTKHAPIP PPPPALDFES GSVDPQMCGP YVADICAYLR
101: EMEGKLKQRP LHDYIEKVQN DITPSMRGVL VDWLVEVAEE YKLVSDTLYL TVSYVDRFLS AKPIHRQRLQ LVGVSAMLIA SKYEEISPPK VEDFVYITDN
201: TFTRQDVVSM EADILLALQF ELGCPTIKTF LRRFTRVAQE DFNESLLQIE FLCCYLSELS LLDYTCVKFL PSLLASSAVF LARFIIRPKQ HPWNQMLEEY
301: TKYKASDLQQ CVGIIHDLYL SRRGNVLEAV RNKYKQHKFK CVATMPVSPE LPLAFFEDVT IRDLKPCVGS C

Best Arabidopsis Sequence Match ( AT1G47230.1 )
(BLAST)

001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA

Arabidopsis Description

CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.