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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
TargetP:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G012460.1
HORVU1Hr1G040110.3 nucleus
HORVU1Hr1G047990.4
HORVU1Hr1G055440.1
HORVU1Hr1G074530.1
HORVU1Hr1G074580.1
HORVU1Hr1G081810.8
HORVU1Hr1G095100.5
HORVU2Hr1G073760.2
HORVU2Hr1G076920.3
HORVU2Hr1G083870.1
HORVU3Hr1G064490.1 nucleus
HORVU3Hr1G064580.1 nucleus
HORVU3Hr1G077400.1
HORVU3Hr1G077440.2
HORVU3Hr1G095800.1
HORVU3Hr1G098650.1
HORVU4Hr1G007370.1
HORVU4Hr1G016410.7
HORVU4Hr1G031620.11
HORVU4Hr1G031770.1
HORVU4Hr1G039630.1
HORVU4Hr1G043300.1
HORVU4Hr1G079310.1
HORVU4Hr1G080410.1 nucleus
HORVU4Hr1G080640.1
HORVU4Hr1G085830.4
HORVU5Hr1G031690.1 nucleus
HORVU5Hr1G093160.3
HORVU5Hr1G111620.1
HORVU6Hr1G012570.2
HORVU6Hr1G013680.2
HORVU6Hr1G019320.1
HORVU6Hr1G074440.1
HORVU6Hr1G092950.1
HORVU7Hr1G037080.3
HORVU7Hr1G058850.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G47220.1 HORVU1Hr1G081810.8 AT1G04810.1 20706207
AT1G47220.1 HORVU4Hr1G031620.11 AT1G22300.1 20706207
AT1G47220.1 HORVU6Hr1G074440.1 AT1G35720.1 20706207
AT1G47220.1 HORVU7Hr1G037080.3 AT1G35720.1 20706207
AT1G47220.1 HORVU2Hr1G076920.3 AT1G59750.1 20706207
AT1G47220.1 HORVU1Hr1G074530.1 AT1G75750.1 20706207
AT1G47220.1 HORVU1Hr1G074580.1 AT1G75750.1 20706207
AT1G47220.1 HORVU4Hr1G079310.1 AT2G27960.1 20706207
AT1G47220.1 HORVU4Hr1G079310.1 AT2G27970.1 20706207
AT1G47220.1 HORVU5Hr1G111620.1 AT2G44160.1 20706207
AT1G47220.1 HORVU2Hr1G073760.2 AT3G11630.1 20706207
AT1G47220.1 HORVU3Hr1G098650.1 AT3G27240.1 20706207
AT1G47220.1 HORVU7Hr1G058850.1 AT3G27240.1 20706207
AT1G47220.1 HORVU4Hr1G085830.4 AT3G48750.1 20706207
AT1G47220.1 HORVU6Hr1G013680.2 AT3G48750.1 20706207
AT1G47220.1 HORVU1Hr1G055440.1 AT4G09320.1 20706207
AT1G47220.1 HORVU6Hr1G012570.2 AT4G34870.1 20706207
AT1G47220.1 HORVU6Hr1G092950.1 AT4G34870.1 20706207
AT1G47220.1 HORVU4Hr1G080640.1 AT4G35830.1 20706207
AT1G47220.1 HORVU6Hr1G012570.2 AT4G38740.1 20706207
AT1G47220.1 HORVU6Hr1G092950.1 AT4G38740.1 20706207
AT1G47220.1 HORVU1Hr1G095100.5 AT5G11170.1 20706207
AT1G47220.1 HORVU4Hr1G007370.1 AT5G38480.1 20706207
AT1G47220.1 HORVU4Hr1G031770.1 AT5G38480.1 20706207
AT1G47220.1 HORVU4Hr1G043300.1 AT5G38480.1 20706207
AT1G47220.1 HORVU1Hr1G047990.4 AT5G53560.1 20706207
AT5G43080.1 HORVU3Hr1G077400.1 AT1G55890.1 20706207
AT5G43080.1 HORVU3Hr1G077440.2 AT1G55890.1 20706207
AT5G43080.1 HORVU6Hr1G019320.1 AT1G55890.1 20706207
AT5G43080.1 HORVU4Hr1G016410.7 AT2G05830.1 20706207
AT5G43080.1 HORVU4Hr1G079310.1 AT2G27970.1 20706207
AT5G43080.1 HORVU1Hr1G040110.3 AT2G32710.1 20018602
AT5G43080.1 HORVU3Hr1G064490.1 AT2G32710.1 20018602
AT5G43080.1 HORVU3Hr1G064580.1 AT2G32710.1 20018602
AT5G43080.1 HORVU4Hr1G080410.1 AT2G32710.1 20018602
AT5G43080.1 HORVU5Hr1G031690.1 AT2G32710.1 20018602
AT5G43080.1 HORVU3Hr1G095800.1 AT3G04620.1 20706207
AT5G43080.1 HORVU4Hr1G085830.4 AT3G48750.1 20706207
AT5G43080.1 HORVU6Hr1G013680.2 AT3G48750.1 20706207
AT5G43080.1 HORVU0Hr1G012460.1 AT4G04020.1 20706207
AT5G43080.1 HORVU5Hr1G093160.3 AT4G16630.1 20706207
AT5G43080.1 HORVU2Hr1G083870.1 AT5G50320.1 20706207
AT5G43080.1 HORVU4Hr1G039630.1 AT5G50320.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G072000.1 Wheat plastid 79.07 95.48
TraesCS5D01G084700.1 Wheat nucleus 79.3 95.24
TraesCS5B01G078200.1 Wheat plastid 79.07 95.23
Os12t0581800-01 Rice nucleus, plastid 59.69 70.39
HORVU4Hr1G013320.1 Barley nucleus 54.63 66.49
Zm00001d030849_P001 Maize nucleus 58.59 62.88
GSMUA_Achr10P... Banana nucleus 43.61 62.46
EES16237 Sorghum nucleus, plastid 58.81 62.38
Zm00001d041334_P001 Maize nucleus, plastid 58.15 60.41
GSMUA_Achr6P11130_001 Banana nucleus 51.54 59.85
CDY06752 Canola nucleus 36.78 58.6
KRH52056 Soybean nucleus 27.09 58.29
VIT_18s0001g09580.t01 Wine grape nucleus, plastid 46.26 57.53
KRH61375 Soybean nucleus 38.55 53.52
PGSC0003DMT400030222 Potato nucleus 41.63 53.39
Solyc04g078310.2.1 Tomato nucleus 43.17 52.83
Solyc12g088530.1.1 Tomato nucleus 41.19 52.82
CDY17091 Canola nucleus 41.63 52.79
KRH15427 Soybean nucleus, plastid 42.29 52.75
KRH05614 Soybean nucleus 42.51 52.59
PGSC0003DMT400030176 Potato nucleus 41.19 52.53
PGSC0003DMT400055428 Potato nucleus 42.51 52.45
CDY47595 Canola nucleus, plastid 42.73 52.29
CDY17037 Canola nucleus, plastid 41.63 51.92
Bra040792.1-P Field mustard nucleus, plastid 41.63 51.92
CDY22369 Canola nucleus 40.09 51.85
Solyc12g088500.1.1 Tomato nucleus 40.09 51.41
AT5G43080.1 Thale cress nucleus 40.09 51.27
Solyc12g088520.1.1 Tomato nucleus 40.09 51.27
Bra033658.1-P Field mustard nucleus 40.09 51.12
AT1G47230.2 Thale cress nucleus, plastid 41.41 50.81
Bra040710.1-P Field mustard nucleus 41.41 50.67
Solyc12g088470.1.1 Tomato nucleus 40.09 50.56
CDY66770 Canola nucleus 40.09 50.28
Bra032220.1-P Field mustard nucleus 38.99 49.58
VIT_03s0091g00280.t01 Wine grape nucleus 37.22 49.56
CDY47596 Canola nucleus 39.43 49.31
Bra040793.1-P Field mustard nucleus 39.43 49.31
CDY23653 Canola nucleus 38.77 49.3
Bra040753.1-P Field mustard nucleus, plastid 39.21 49.04
CDY06757 Canola nucleus, plastid 39.21 49.04
CDY17039 Canola nucleus 39.21 49.04
KRH61369 Soybean nucleus 35.24 48.93
KRH52055 Soybean nucleus 38.55 48.88
KRH61371 Soybean nucleus 37.0 48.14
AT1G47210.2 Thale cress nucleus 38.55 47.04
AT1G47220.1 Thale cress nucleus 33.04 45.87
KRH61373 Soybean nucleus, plastid 37.89 45.87
Solyc10g049360.1.1 Tomato nucleus 37.44 44.97
PGSC0003DMT400056625 Potato nucleus 37.44 44.74
HORVU4Hr1G069310.3 Barley nucleus 35.68 39.04
HORVU0Hr1G001680.1 Barley nucleus 22.91 32.5
HORVU1Hr1G068080.1 Barley plastid 22.91 30.41
HORVU3Hr1G114440.21 Barley nucleus, plastid 33.7 30.18
HORVU0Hr1G022770.1 Barley nucleus, plastid 17.4 28.42
HORVU1Hr1G068010.7 Barley mitochondrion, nucleus 24.67 26.67
HORVU1Hr1G068160.2 Barley nucleus, plastid 25.55 26.19
HORVU0Hr1G026010.1 Barley nucleus, plastid 25.55 26.19
HORVU0Hr1G001690.16 Barley nucleus, peroxisome 24.89 25.8
HORVU7Hr1G121820.6 Barley nucleus 22.91 24.76
HORVU3Hr1G078880.2 Barley nucleus 24.45 24.5
HORVU3Hr1G040990.2 Barley nucleus, plastid 24.89 22.97
HORVU2Hr1G096070.2 Barley nucleus 22.47 21.66
Protein Annotations
EnsemblPlants:HORVU5Hr1G018820.2EnsemblPlantsGene:HORVU5Hr1G018820Gene3D:1.10.472.10GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NPANTHER:PTHR10177
PANTHER:PTHR10177:SF345PFAM:PF00134PFAM:PF02984ScanProsite:PS00292SEG:segSMART:SM00385
SMART:SM01332SUPFAM:SSF47954UniParc:UPI000B46E7B6UniProt:A0A287QJB1MapMan:13.1.1.1.1:
Description
No Description!
Coordinates
chrchr5H:+:78260390..78262668
Molecular Weight (calculated)
49515.1 Da
IEP (calculated)
8.048
GRAVY (calculated)
-0.273
Length
454 amino acids
Sequence
(BLAST)
001: PKSPKFLQSH QAKPDQSSTQ RRAGFFSLLL FEFACFGGHL PSHSSNPLYI TASASRLPPP PPRTESQSPT PVSTSPPTMA DKENAAPAAG PRLTRAAAKR
101: AATCSAGPSG GAKRKRVALS ELPIVSNAGV ALRQPSKPAK PAAAAEGEDE HGDVSRCAST SPSPAGEEVS GGGGRGEAQL SGSYASDIYT YLRTMEVEAP
201: RRPAADYIET VQTDVTANMR AILIDWLVEV AEEYKLVADT LYLTVSYVDR FLSANPLSRN RLQLLGVAAM LIASKYEEIS PPHVEDFCYI TDNTYTRQEL
301: LTMESDILKL LNFEIGSPTI KTFIRRFTRS GPEDKKRSSL LLEFMGSYLA ELSLLDYSCL RFLPSVVAAS SIFLARLTIG PDTNPWGKEM HKLTGYGASE
401: LKDCIIAIHD LQLNRKGPSL PAIRDKYKQH RFKCVSMLLP PVEIPASYFQ DLTE
Best Arabidopsis Sequence Match ( AT1G47230.1 )
(BLAST)
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
Arabidopsis Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.