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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000619.1-P
Bra000785.1-P
Bra001110.1-P
Bra005565.1-P nucleus
Bra005615.1-P
Bra015169.1-P
Bra018036.1-P
Bra021808.1-P nucleus
Bra022897.1-P nucleus
Bra029481.1-P
Bra029917.1-P
Bra034380.1-P
Bra037096.1-P
Bra038492.1-P
Bra039199.1-P nucleus
Bra040393.1-P
Bra040743.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G43080.1 Bra037096.1-P AT1G55890.1 20706207
AT5G43080.1 Bra015169.1-P AT2G05830.1 20706207
AT5G43080.1 Bra039199.1-P AT2G23430.1 20018602
AT5G43080.1 Bra034380.1-P AT2G27970.1 20706207
AT5G43080.1 Bra005615.1-P AT2G31920.1 20706207
AT5G43080.1 Bra005565.1-P AT2G32710.1 20018602
AT5G43080.1 Bra021808.1-P AT2G32710.1 20018602
AT5G43080.1 Bra022897.1-P AT2G32710.1 20018602
AT5G43080.1 Bra001110.1-P AT3G04620.1 20706207
AT5G43080.1 Bra040393.1-P AT3G04620.1 20706207
AT5G43080.1 Bra018036.1-P AT3G48750.1 20706207
AT5G43080.1 Bra029917.1-P AT3G48750.1 20706207
AT5G43080.1 Bra000785.1-P AT4G04020.1 20706207
AT5G43080.1 Bra029481.1-P AT4G04020.1 20706207
AT5G43080.1 Bra038492.1-P AT4G16630.1 20706207
AT5G43080.1 Bra040743.1-P AT4G16630.1 20706207
AT5G43080.1 Bra000619.1-P AT5G50320.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22369 Canola nucleus 97.75 99.15
AT5G43080.1 Thale cress nucleus 83.15 83.38
Bra032220.1-P Field mustard nucleus 70.79 70.59
Bra040793.1-P Field mustard nucleus 70.51 69.15
Bra040753.1-P Field mustard nucleus, plastid 70.22 68.87
Bra040792.1-P Field mustard nucleus, plastid 68.26 66.76
Bra040710.1-P Field mustard nucleus 69.1 66.31
KRH52056 Soybean nucleus 37.36 63.03
OQU91386 Sorghum nucleus 44.66 60.92
VIT_18s0001g09580.t01 Wine grape nucleus, plastid 61.52 60.0
Solyc12g088530.1.1 Tomato nucleus 58.15 58.47
PGSC0003DMT400030222 Potato nucleus 57.87 58.19
PGSC0003DMT400055428 Potato nucleus 60.11 58.15
Solyc04g078310.2.1 Tomato nucleus 60.11 57.68
PGSC0003DMT400030176 Potato nucleus 57.58 57.58
KRH15427 Soybean nucleus, plastid 58.43 57.14
KRH61375 Soybean nucleus 52.25 56.88
GSMUA_Achr10P... Banana nucleus 50.56 56.78
Solyc12g088500.1.1 Tomato nucleus 56.18 56.5
KRH05614 Soybean nucleus 58.15 56.4
Solyc12g088470.1.1 Tomato nucleus 56.74 56.11
Solyc12g088520.1.1 Tomato nucleus 55.9 56.06
TraesCS4D01G076900.1 Wheat nucleus 57.3 55.14
HORVU4Hr1G013320.1 Barley nucleus 56.74 54.16
KRH61369 Soybean nucleus 49.72 54.13
TraesCS4B01G078300.1 Wheat nucleus 55.9 53.64
TraesCS4A01G236700.2 Wheat plastid 56.46 53.6
KRH52055 Soybean nucleus 53.37 53.07
KRH61371 Soybean nucleus 51.97 53.01
Zm00001d033365_P002 Maize nucleus 54.21 51.88
GSMUA_Achr2P21530_001 Banana cytosol, nucleus, plastid 41.57 51.75
KRH61373 Soybean nucleus, plastid 54.49 51.73
GSMUA_Achr6P11130_001 Banana nucleus 56.74 51.66
GSMUA_Achr2P21520_001 Banana nucleus 50.28 49.72
TraesCS5B01G078200.1 Wheat plastid 52.25 49.34
Zm00001d013744_P001 Maize nucleus 49.44 49.3
TraesCS5D01G084700.1 Wheat nucleus 51.69 48.68
TraesCS5A01G072000.1 Wheat plastid 51.4 48.67
Os12t0581800-01 Rice nucleus, plastid 51.69 47.79
Zm00001d030849_P001 Maize nucleus 54.21 45.63
TraesCS4D01G253200.1 Wheat nucleus 31.18 45.49
EES16237 Sorghum nucleus, plastid 54.49 45.33
Zm00001d041334_P001 Maize nucleus, plastid 52.25 42.56
Bra000822.1-P Field mustard nucleus 43.26 40.85
HORVU5Hr1G018820.2 Barley nucleus, plastid 51.12 40.09
EER95303 Sorghum nucleus, plastid 42.7 39.9
TraesCS4B01G254000.1 Wheat nucleus 42.13 39.89
Bra026756.1-P Field mustard plastid 45.51 39.61
Bra031463.1-P Field mustard nucleus 41.01 39.57
TraesCS4A01G050700.1 Wheat nucleus 41.85 39.21
TraesCS4A01G051300.1 Wheat nucleus 37.08 38.48
TraesCS4D01G253900.1 Wheat nucleus 41.01 38.42
Bra015671.1-P Field mustard plastid 41.01 37.82
TraesCS4B01G253100.1 Wheat nucleus 35.67 37.24
Bra003563.1-P Field mustard plastid 44.1 36.34
Bra022173.1-P Field mustard nucleus, plastid 38.48 36.34
Bra016654.1-P Field mustard nucleus, plastid 44.66 35.73
Bra023606.1-P Field mustard plastid 41.57 35.32
HORVU4Hr1G069310.3 Barley nucleus 40.73 34.94
Bra008477.1-P Field mustard plastid 44.66 34.79
Bra008973.1-P Field mustard nucleus, plastid 42.42 34.55
Bra032202.1-P Field mustard plastid 40.73 34.36
Bra035186.1-P Field mustard plastid 44.38 34.2
Bra026120.1-P Field mustard nucleus 44.1 33.69
Os03t0607600-00 Rice nucleus 52.53 30.76
Zm00001d048127_P001 Maize plastid 39.33 29.23
Bra002046.1-P Field mustard nucleus 32.02 29.01
Bra005880.1-P Field mustard nucleus, plastid 33.71 28.99
Bra028741.1-P Field mustard nucleus 32.87 28.19
Bra017726.1-P Field mustard nucleus 32.02 28.08
Os03t0208700-00 Rice nucleus 31.74 27.63
Bra037265.1-P Field mustard nucleus 30.9 26.89
Bra024504.1-P Field mustard nucleus 31.46 26.73
Bra003727.1-P Field mustard nucleus 28.09 26.11
Bra016460.1-P Field mustard nucleus 29.49 25.61
Bra025831.1-P Field mustard nucleus 29.21 25.37
Bra011769.1-P Field mustard nucleus 30.34 25.23
Bra015762.1-P Field mustard nucleus 29.49 24.36
Bra026065.1-P Field mustard nucleus 27.53 19.37
Bra036544.1-P Field mustard nucleus 43.54 15.7
Bra016640.1-P Field mustard nucleus 28.37 15.42
Os03t0208800-00 Rice nucleus 14.04 12.59
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.1EnsemblPlantsGene:Bra033658EnsemblPlants:Bra033658.1EnsemblPlants:Bra033658.1-PInterPro:Cyclin-A_plant
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634UniProt:M4EXW9PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771
ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF270SMART:SM00385SMART:SM01332SUPFAM:SSF47954
UniParc:UPI000253F7ABSEG:seg::::
Description
AT5G43080 (E=6e-153) CYCA3;1 | CYCA3;1 (Cyclin A3;1); cyclin-dependent protein kinase regulator
Coordinates
chrA06:-:25772050..25773620
Molecular Weight (calculated)
41358.4 Da
IEP (calculated)
9.294
GRAVY (calculated)
-0.346
Length
356 amino acids
Sequence
(BLAST)
001: MSDDKENFVR MTRAATKRKA AMADEDRLSK KKKKRVVLGE LPNLCNKRKQ TRKPLRVPKK QNKKTSKSDI DTRSDDPQMC APYVTGIFVY LRQLEVKEKS
101: RPLIDYIEKV QRDVTPNMRG VLVDWLVEVA EEYKLLSDTL YLAVSYIDRF LSLRTVNRQK LQLLGVSAML IASKYEEITP PNVEDFCYIT DNTYTKQEIV
201: KMEADVLLAL QFELGNPTTN TFLSLFERFT RVAQEDFNMS HLQMEFLCSY LSELSMLDYN SLKFLPSVVA ASAVYLARFI IRPKQHPWSV MLEEYTRYKA
301: GDLRECVCMI HDLYLSRKGG ALQAVREKYK QHKFKCVATM PVSPELPLTF FEDVSI
Best Arabidopsis Sequence Match ( AT5G43080.1 )
(BLAST)
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.