Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra005931.1-P | |
Bra006242.1-P | |
Bra009273.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G44110.1 | Bra005931.1-P | AT5G07300.1 | 20706207 |
AT1G44110.1 | Bra009273.1-P | AT5G07300.1 | 20706207 |
AT1G44110.1 | Bra006242.1-P | AT5G14170.1 | 20706207 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX85466 | Canola | plastid | 97.14 | 96.45 |
CDY02719 | Canola | plastid | 95.23 | 93.01 |
Bra032202.1-P | Field mustard | plastid | 78.28 | 77.73 |
AT1G44110.1 | Thale cress | plastid | 77.09 | 70.22 |
Os05t0237100-01 | Rice | extracellular | 29.36 | 62.44 |
Bra015671.1-P | Field mustard | plastid | 49.88 | 54.15 |
KRH64625 | Soybean | plastid | 62.29 | 53.93 |
KRH53279 | Soybean | plastid | 61.1 | 53.33 |
TraesCS1B01G151800.3 | Wheat | nucleus | 44.63 | 52.68 |
VIT_18s0001g02060.t01 | Wine grape | plastid | 60.62 | 51.31 |
Solyc11g005090.1.1 | Tomato | plastid | 58.23 | 49.8 |
PGSC0003DMT400015424 | Potato | plastid | 55.85 | 49.58 |
KRH17986 | Soybean | plastid | 58.71 | 48.91 |
KRH16410 | Soybean | plastid | 58.47 | 48.61 |
Bra022173.1-P | Field mustard | nucleus, plastid | 43.44 | 48.28 |
Os12t0298950-00 | Rice | nucleus | 50.36 | 47.2 |
Os01t0233100-00 | Rice | nucleus, plastid | 53.46 | 45.62 |
GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 54.42 | 45.6 |
Zm00001d032128_P001 | Maize | cytosol | 17.18 | 45.57 |
Os01t0233500-01 | Rice | nucleus, plastid | 54.89 | 45.28 |
TraesCS3B01G183400.1 | Wheat | plastid | 54.89 | 45.1 |
GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 53.94 | 45.02 |
TraesCS3D01G164600.1 | Wheat | plastid | 54.65 | 44.9 |
TraesCS3A01G157000.1 | Wheat | plastid | 54.18 | 44.25 |
TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 50.12 | 44.03 |
Bra000822.1-P | Field mustard | nucleus | 39.38 | 43.77 |
Zm00001d040381_P001 | Maize | plastid | 55.61 | 43.71 |
Bra031463.1-P | Field mustard | nucleus | 38.19 | 43.36 |
Bra033658.1-P | Field mustard | nucleus | 35.32 | 41.57 |
KXG21616 | Sorghum | nucleus, plastid | 47.02 | 41.13 |
Bra032220.1-P | Field mustard | nucleus | 34.61 | 40.62 |
Bra026756.1-P | Field mustard | plastid | 39.62 | 40.59 |
Bra040753.1-P | Field mustard | nucleus, plastid | 35.08 | 40.5 |
Bra040792.1-P | Field mustard | nucleus, plastid | 35.08 | 40.38 |
Bra040793.1-P | Field mustard | nucleus | 34.61 | 39.94 |
Bra040710.1-P | Field mustard | nucleus | 35.08 | 39.62 |
Zm00001d009011_P001 | Maize | nucleus, plastid | 47.73 | 39.22 |
Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 18.62 | 39.0 |
Bra003563.1-P | Field mustard | plastid | 38.9 | 37.73 |
TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 47.26 | 37.71 |
Bra008973.1-P | Field mustard | nucleus, plastid | 38.66 | 37.07 |
Bra016654.1-P | Field mustard | nucleus, plastid | 39.14 | 36.85 |
Bra008477.1-P | Field mustard | plastid | 40.1 | 36.76 |
Bra035186.1-P | Field mustard | plastid | 39.14 | 35.5 |
Bra026120.1-P | Field mustard | nucleus | 39.14 | 35.19 |
Zm00001d010404_P001 | Maize | nucleus | 37.23 | 32.16 |
Bra003727.1-P | Field mustard | nucleus | 27.45 | 30.03 |
Bra002046.1-P | Field mustard | nucleus | 28.16 | 30.03 |
Bra017726.1-P | Field mustard | nucleus | 28.88 | 29.8 |
Bra016460.1-P | Field mustard | nucleus | 29.12 | 29.76 |
Bra025831.1-P | Field mustard | nucleus | 28.88 | 29.51 |
Bra024504.1-P | Field mustard | nucleus | 29.12 | 29.12 |
Bra015762.1-P | Field mustard | nucleus | 29.83 | 29.0 |
Bra005880.1-P | Field mustard | nucleus, plastid | 28.16 | 28.5 |
Bra037265.1-P | Field mustard | nucleus | 27.68 | 28.36 |
Bra028741.1-P | Field mustard | nucleus | 27.45 | 27.71 |
Bra011769.1-P | Field mustard | nucleus | 26.97 | 26.4 |
Bra026065.1-P | Field mustard | nucleus | 24.11 | 19.96 |
Bra036544.1-P | Field mustard | nucleus | 37.95 | 16.11 |
Bra016640.1-P | Field mustard | nucleus | 23.87 | 15.27 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EnsemblPlantsGene:Bra023606 | EnsemblPlants:Bra023606.1 | EnsemblPlants:Bra023606.1-P | InterPro:Cyclin-like |
InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | UniProt:M4E4A3 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
PANTHER:PTHR10177 | PANTHER:PTHR10177:SF239 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00025430C1 |
Description
AT1G44110 (E=5e-147) CYCA1;1 | CYCA1;1 (Cyclin A1;1); cyclin-dependent protein kinase regulator
Coordinates
chrA02:+:4164013..4165895
Molecular Weight (calculated)
47223.7 Da
IEP (calculated)
8.118
GRAVY (calculated)
-0.325
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKTTNQNRR PSFTSSTESS MRKRHGPPPS SSSAVKPISN TAVMVAKKRA PLGNITNQKK DSRIFPNSSS ADSAHCPNKS AKLKLAAPTQ PVCVNACETK
101: STCEEEVVPI ERKAFSNLCI TPIMSETENK EDKFMNIDNK DDADPQLCAT FACDIYNHLR AAEAKKQPAV DYMATVQKDV NSTMRGILVD WLVEVSEEYR
201: LVPETLYLTV NYIDRYLSGN VISRQKLQLL GVACMMIAAK YEEVCAPQVE EFCYITDNTY LKDEVLDMES AVLNYLKFEM SAPTVKCFLR RFSRAAQGVH
301: EAPCMQLECM ASYIAELSLL EYTMLSHSPS LVAASAIFLA KYTLDPTRRP WNSTLRHYTQ YEAMELRGCV MDLQRLCSNA HVSTLPAVRD KYSQHKYKFV
401: AKKFCPSIIP PDFFKNSLY
101: STCEEEVVPI ERKAFSNLCI TPIMSETENK EDKFMNIDNK DDADPQLCAT FACDIYNHLR AAEAKKQPAV DYMATVQKDV NSTMRGILVD WLVEVSEEYR
201: LVPETLYLTV NYIDRYLSGN VISRQKLQLL GVACMMIAAK YEEVCAPQVE EFCYITDNTY LKDEVLDMES AVLNYLKFEM SAPTVKCFLR RFSRAAQGVH
301: EAPCMQLECM ASYIAELSLL EYTMLSHSPS LVAASAIFLA KYTLDPTRRP WNSTLRHYTQ YEAMELRGCV MDLQRLCSNA HVSTLPAVRD KYSQHKYKFV
401: AKKFCPSIIP PDFFKNSLY
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Arabidopsis Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.