Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007039_P001 | |
| Zm00001d016615_P002 | |
| Zm00001d022322_P001 | |
| Zm00001d045433_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032128_P001 | Maize | cytosol | 60.5 | 76.58 |
| Os12t0298950-00 | Rice | nucleus | 56.0 | 25.06 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 62.5 | 24.51 |
| Os01t0233100-00 | Rice | nucleus, plastid | 57.5 | 23.42 |
| Os01t0233500-01 | Rice | nucleus, plastid | 58.5 | 23.03 |
| Zm00001d040381_P001 | Maize | plastid | 60.0 | 22.51 |
| Zm00001d019469_P001 | Maize | extracellular | 16.0 | 22.38 |
| TraesCS3B01G183400.1 | Wheat | plastid | 57.0 | 22.35 |
| VIT_18s0001g02080.t01 | Wine grape | nucleus, plastid | 41.0 | 22.16 |
| TraesCS3D01G164600.1 | Wheat | plastid | 56.5 | 22.16 |
| TraesCS3A01G157000.1 | Wheat | plastid | 56.5 | 22.03 |
| CDY41784 | Canola | plastid | 37.0 | 21.76 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 51.0 | 20.32 |
| CDX87520 | Canola | nucleus | 37.5 | 19.43 |
| KRH64625 | Soybean | plastid | 46.5 | 19.21 |
| CDX88368 | Canola | plastid | 36.5 | 19.21 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 48.0 | 19.2 |
| Bra015671.1-P | Field mustard | plastid | 37.0 | 19.17 |
| KRH53279 | Soybean | plastid | 46.0 | 19.17 |
| Bra032202.1-P | Field mustard | plastid | 39.5 | 18.72 |
| CDX85466 | Canola | plastid | 39.5 | 18.72 |
| PGSC0003DMT400015424 | Potato | plastid | 44.0 | 18.64 |
| Bra023606.1-P | Field mustard | plastid | 39.0 | 18.62 |
| CDY25649 | Canola | plastid | 40.0 | 18.31 |
| AT1G44110.1 | Thale cress | plastid | 42.0 | 18.26 |
| CDY02719 | Canola | plastid | 39.0 | 18.18 |
| CDY65994 | Canola | plastid | 40.0 | 18.06 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 44.5 | 17.98 |
| Solyc11g005090.1.1 | Tomato | plastid | 44.0 | 17.96 |
| CDX92090 | Canola | mitochondrion, nucleus | 31.5 | 17.65 |
| AT1G77390.1 | Thale cress | plastid | 38.0 | 17.19 |
| KRH17986 | Soybean | plastid | 43.0 | 17.1 |
| Zm00001d013744_P001 | Maize | nucleus | 30.5 | 17.09 |
| Bra022173.1-P | Field mustard | nucleus, plastid | 32.0 | 16.98 |
| Zm00001d033365_P002 | Maize | nucleus | 31.0 | 16.67 |
| KRH16410 | Soybean | plastid | 41.0 | 16.27 |
| Zm00001d010404_P001 | Maize | nucleus | 39.0 | 16.08 |
| Zm00001d030849_P001 | Maize | nucleus | 31.5 | 14.89 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 31.5 | 14.42 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 28.5 | 11.75 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 29.0 | 11.13 |
| Zm00001d036360_P002 | Maize | nucleus | 23.5 | 11.08 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 22.5 | 10.02 |
| Zm00001d010656_P001 | Maize | nucleus | 22.0 | 9.87 |
| Zm00001d026129_P001 | Maize | nucleus | 21.0 | 9.86 |
| Zm00001d048127_P001 | Maize | plastid | 23.0 | 9.6 |
| Zm00001d002662_P010 | Maize | nucleus | 21.5 | 9.45 |
| Zm00001d043164_P002 | Maize | nucleus | 22.0 | 9.09 |
| Zm00001d008221_P001 | Maize | nucleus | 21.5 | 8.98 |
| Zm00001d020033_P001 | Maize | nucleus | 22.0 | 8.09 |
| Zm00001d020996_P001 | Maize | nucleus | 21.5 | 7.9 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 8.0 | 7.58 |
Protein Annotations
| EnsemblPlants:Zm00001d021353_P002 | EnsemblPlants:Zm00001d021353_T002 | EnsemblPlantsGene:Zm00001d021353 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_N | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF239 | PFAM:PF00134 | PIRSF:PIRSF001771 | ProteinID:ONM56949.1 |
| ScanProsite:PS00292 | SUPFAM:SSF47954 | UniParc:UPI00084543F6 | UniProt:A0A1D6IAE7 | MapMan:35.1 | : |
Description
Cyclin-A1-1
Coordinates
chr7:+:149735558..149738325
Molecular Weight (calculated)
23016.3 Da
IEP (calculated)
7.857
GRAVY (calculated)
-0.259
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLVAQRVNR KRNGCLQEEM LTKLARREKA TNIKPDHDID VYMKVRLLQV LDLEVCANTL VGKEMMRGIS GGQRKHVTIE NKWEKNGSAL MEIDSICEVD
101: SNFEDPQLCV ALASDIYMHL REAETKKRPS TDFMEMIQKD VNPSMRAILI DWLVKVAEEY RLAPDTLYLT INYIDRYLSG NKINRQRLQL LGVACMLIAA
101: SNFEDPQLCV ALASDIYMHL REAETKKRPS TDFMEMIQKD VNPSMRAILI DWLVKVAEEY RLAPDTLYLT INYIDRYLSG NKINRQRLQL LGVACMLIAA
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI AS
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI AS
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.