Factsheet for Zm00001d022322_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045433_P001	Maize	plastid	43.8	94.72
Os04t0382100-01	Rice	nucleus	61.28	94.22
KXG36804	Sorghum	plastid	88.16	88.16
Zm00001d007039_P001	Maize	plastid	87.59	87.59
TraesCS2D01G280300.1	Wheat	plastid	80.45	81.68
TraesCS2B01G298800.1	Wheat	plastid	80.45	81.52
TraesCS2A01G281500.1	Wheat	nucleus	80.45	81.37
HORVU2Hr1G068970.1	Barley	cytosol	71.99	73.94
VIT_17s0000g01500.t01	Wine grape	cytosol	53.01	70.68
GSMUA_Achr9P01520_001	Banana	plastid	63.72	68.76
GSMUA_Achr6P20740_001	Banana	plastid	66.35	68.28
CDY58407	Canola	plastid	57.71	63.56
CDX69600	Canola	plastid	57.33	63.15
CDX78564	Canola	plastid	54.32	62.96
AT3G01890.1	Thale cress	plastid	53.76	62.45
CDX70546	Canola	plastid	54.14	61.94
AT5G14170.1	Thale cress	plastid	60.53	60.3
VIT_14s0068g02140.t01	Wine grape	plastid	61.09	59.31
Bra006242.1-P	Field mustard	plastid	54.51	57.65
KRG94254	Soybean	nucleus	58.83	57.64
KRH57679	Soybean	nucleus	58.65	57.46
KRG94519	Soybean	nucleus	51.13	56.9
Solyc02g068100.2.1	Tomato	nucleus	55.26	54.04
KRH57226	Soybean	nucleus	51.32	53.22
KRH06950	Soybean	plastid	38.35	52.17
PGSC0003DMT400017831	Potato	nucleus, plastid	55.26	51.49
KRH03955	Soybean	nucleus	50.56	51.24
PGSC0003DMT400039420	Potato	plastid	49.25	49.81
Solyc03g111250.2.1	Tomato	nucleus	49.25	49.81
KRH63759	Soybean	plastid	48.5	48.77
KRH54192	Soybean	plastid	47.37	47.28

Protein Annotations

Gene3D:1.10.245.10	MapMan:12.4.2.2	UniProt:A0A1D6IL43	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	ProteinID:ONM60122.1	PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	SMART:SM00151
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI00084466F5	EnsemblPlantsGene:Zm00001d022322
EnsemblPlants:Zm00001d022322_P001	EnsemblPlants:Zm00001d022322_T001	SEG:seg	:	:	:

Description

SWI/SNF complex component SNF12 homolog

Coordinates

chr7:+:175409795..175411986

Molecular Weight (calculated)

57998.6 Da

IEP (calculated)

10.349

GRAVY (calculated)

-0.452

Length

532 amino acids

Sequence
(BLAST)

001: MASGGNPNPT GAPSQPRPPH TQQQPPPGGS PAAPMTHLRP PSLSGSPFKG LFHTPPTHNP AFQIHMGASS SPQNPLMTAT AGSAKRPPQK PPIRPPAPGS
101: TSSAAAASAA AAYKAAAAAA AVANSGGVDL TPAARRNKKR KLPVKQLPDR VAALLPESAL YTQLLEFEAR VDAALARKKV DIQEALKTPP SLQRTLRIYV
201: FNTFANQGPR TIPPPKNADP PTWSLKIIGR VLEDGAELDP ASVVPKHNPV YPKFSQFFKR VTIALDPSLY PENPLIIWEN ARAAAQQEGF EVKRKGDKEF
301: VANIRLEMNY SPEKFKLSQP LMEVLGVEVD TRARVIAALW QYIKAKKLQN PNDPSFFMCD PQLKKVFGED KLKFAMLSQK ISQHLSAPPP INLDHKIKLS
401: GNGAHSSACY DVLVDVPFPL QKEMMAFLAN TEKHKDIEAC DEVISASIKK IHEHRRRRAF FLGFSQSPVE FINALIASQS KDLKLVAGEA NRNIEKERRA
501: DFYNQPWVED AVIRYLNRKP ANEGPGGGAG GS

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.