Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039420 | Potato | plastid | 94.11 | 94.11 |
| VIT_17s0000g01500.t01 | Wine grape | cytosol | 49.24 | 64.91 |
| Os04t0382100-01 | Rice | nucleus | 39.54 | 60.12 |
| Zm00001d045433_P001 | Maize | plastid | 27.19 | 58.13 |
| GSMUA_Achr9P01520_001 | Banana | plastid | 52.28 | 55.78 |
| GSMUA_Achr6P20740_001 | Banana | plastid | 53.99 | 54.93 |
| Solyc02g068100.2.1 | Tomato | nucleus | 52.28 | 50.55 |
| TraesCS2B01G298800.1 | Wheat | plastid | 50.38 | 50.48 |
| TraesCS2D01G280300.1 | Wheat | plastid | 50.19 | 50.38 |
| TraesCS2A01G281500.1 | Wheat | nucleus | 50.38 | 50.38 |
| KXG36804 | Sorghum | plastid | 50.95 | 50.38 |
| Zm00001d007039_P001 | Maize | plastid | 50.19 | 49.62 |
| KRH57226 | Soybean | nucleus | 48.29 | 49.51 |
| Zm00001d022322_P001 | Maize | plastid | 49.81 | 49.25 |
| KRH54192 | Soybean | plastid | 48.67 | 48.03 |
| KRH03955 | Soybean | nucleus | 47.91 | 48.0 |
| HORVU2Hr1G068970.1 | Barley | cytosol | 46.77 | 47.49 |
| KRH63759 | Soybean | plastid | 46.77 | 46.5 |
Protein Annotations
| EnsemblPlants:Solyc03g111250.2.1 | EnsemblPlantsGene:Solyc03g111250.2 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | ncoils:Coil | PANTHER:PTHR13844 |
| PANTHER:PTHR13844:SF22 | PFAM:PF02201 | SEG:seg | SMART:SM00151 | SUPFAM:SSF47592 | UniParc:UPI0002768D19 |
| UniProt:K4BJY8 | MapMan:12.4.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:61863680..61867144
Molecular Weight (calculated)
58665.5 Da
IEP (calculated)
9.963
GRAVY (calculated)
-0.516
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNNPVKNV SLGTSVPIQI PQSMPINHNQ PAVRHFSQSP AQRGSHFPGH FQLSESRSHA PFQGQAQAFS HFITSGVNTN AGVLSPAAST PNTASGGARK
101: VLHRPPSRTG GSSNHGQATA SPLKTMELTP AVRRKKQKVS DRFIPDKVAA SLPESALYSQ LLEFEGRVDA LLSRKKIDML ESLKSPPRFQ RTLRIYVFNT
201: FANQTPANPD SDSAEPASWS LKIIGRILGG GSGSQASERE QKLGVACPKF SSFFKKVTVY LDQSLYPENH VILWDSSRSP ALHEGFEIKR KGDKELTAII
301: RLEMNYMPEK FKLSPALQEV LGIEVETRAK VLAALWYYIK TKKLQICHDT SSFTCDPPLR KIFGEEKLKF SLVSQKIHPH LTAPQPIHLE HRIKLSGSSP
401: AGNTCYDVLV DVPFTLQKEF STFLSDLDKN KEIDAYDEAI STALKQIHEH QRRRAFFLGF SQSPTDFVNA LVASQARDLK LVSDDSTRDS EMERRSEFYN
501: QSWTEDAVVR YLNRNHASGA DHSARK
101: VLHRPPSRTG GSSNHGQATA SPLKTMELTP AVRRKKQKVS DRFIPDKVAA SLPESALYSQ LLEFEGRVDA LLSRKKIDML ESLKSPPRFQ RTLRIYVFNT
201: FANQTPANPD SDSAEPASWS LKIIGRILGG GSGSQASERE QKLGVACPKF SSFFKKVTVY LDQSLYPENH VILWDSSRSP ALHEGFEIKR KGDKELTAII
301: RLEMNYMPEK FKLSPALQEV LGIEVETRAK VLAALWYYIK TKKLQICHDT SSFTCDPPLR KIFGEEKLKF SLVSQKIHPH LTAPQPIHLE HRIKLSGSSP
401: AGNTCYDVLV DVPFTLQKEF STFLSDLDKN KEIDAYDEAI STALKQIHEH QRRRAFFLGF SQSPTDFVNA LVASQARDLK LVSDDSTRDS EMERRSEFYN
501: QSWTEDAVVR YLNRNHASGA DHSARK
001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW
Arabidopsis Description
CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.