Factsheet for Os04t0382100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

nucleus: 19621931
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045433_P001	Maize	plastid	45.95	64.63
HORVU2Hr1G068970.1	Barley	cytosol	92.49	61.78
Zm00001d022322_P001	Maize	plastid	94.22	61.28
TraesCS2D01G280300.1	Wheat	plastid	92.77	61.26
TraesCS2B01G298800.1	Wheat	plastid	92.77	61.14
KXG36804	Sorghum	plastid	93.93	61.09
TraesCS2A01G281500.1	Wheat	nucleus	92.77	61.03
Zm00001d007039_P001	Maize	plastid	93.64	60.9
VIT_17s0000g01500.t01	Wine grape	cytosol	69.08	59.9
GSMUA_Achr9P01520_001	Banana	plastid	78.61	55.17
GSMUA_Achr6P20740_001	Banana	plastid	79.77	53.38
CDY58407	Canola	plastid	71.1	50.93
CDX78564	Canola	plastid	67.34	50.76
CDX69600	Canola	plastid	70.81	50.72
CDX70546	Canola	plastid	66.47	49.46
AT3G01890.1	Thale cress	plastid	65.03	49.13
AT5G14170.1	Thale cress	plastid	73.41	47.57
VIT_14s0068g02140.t01	Wine grape	plastid	74.28	46.9
Bra006242.1-P	Field mustard	plastid	66.76	45.92
KRH57679	Soybean	nucleus	71.1	45.3
KRG94254	Soybean	nucleus	71.1	45.3
KRG94519	Soybean	nucleus	62.43	45.19
KRH57226	Soybean	nucleus	62.43	42.11
Solyc02g068100.2.1	Tomato	nucleus	65.61	41.73
KRH03955	Soybean	nucleus	62.72	41.33
KRH06950	Soybean	plastid	46.53	41.18
PGSC0003DMT400017831	Potato	nucleus, plastid	65.9	39.93
PGSC0003DMT400039420	Potato	plastid	60.12	39.54
Solyc03g111250.2.1	Tomato	nucleus	60.12	39.54
KRH63759	Soybean	plastid	59.54	38.94
KRH54192	Soybean	plastid	58.38	37.9

Protein Annotations

Gene3D:1.10.245.10	MapMan:12.4.2.2	ProteinID:BAF14519.1	ProteinID:BAS88898.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	EnsemblPlantsGene:Os04g0382100	EnsemblPlants:Os04t0382100-01	PFAM:PF02201	PANTHER:PTHR13844
PANTHER:PTHR13844:SF22	UniProt:Q0JDR8	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI0000DD9040	SEG:seg	:	:	:

Description

SWIB complex BAF60b domain-containing proteinSWIB/MDM2 domain containing protein. (Os04t0382100-01)

Coordinates

chr4:+:18736469..18737704

Molecular Weight (calculated)

38944.7 Da

IEP (calculated)

9.695

GRAVY (calculated)

-0.455

Length

346 amino acids

Sequence
(BLAST)

001: PPALQRTLRI YVFNTFANQA PRTIPPPKNA EPPTWSLKII GRVLEDGAEL DPASVVPKHN PVYPKFSSFF KRVTIALDPS LYPENPLIIW ENARSAAPQE
101: GFEVKRKGDK EFSANIRLEM NYNPEKFKLS QPLMEVLGVE VDTRSRVIAA LWQYIKAKKL QNPTDPSFFM CDPQLKKVFG EDKLRFAMLS QKISQHLSPP
201: PPINLEHKIK LSGNGAHASA CYDVIVDVPF PLQKEMSAFL ANTEKHKDIE ACDEVISASI KKIHEHRRRR AFFLGFSQSP VEFINALIAS QSKDLKLIAG
301: EANRNIERER RADFYNQPWV EDAVIRYLNR KPASGNEGPG GGAGGS

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.