CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06950	Soybean	plastid	63.81	78.01
CDX78564	Canola	plastid	60.67	63.18
CDY58407	Canola	plastid	63.18	62.53
Os04t0382100-01	Rice	nucleus	45.19	62.43
CDX69600	Canola	plastid	62.76	62.11
KRG94254	Soybean	nucleus	70.5	62.06
KRH57679	Soybean	nucleus	70.29	61.88
CDX70546	Canola	plastid	59.62	61.29
VIT_14s0068g02140.t01	Wine grape	plastid	67.78	59.12
AT5G14170.1	Thale cress	plastid	65.48	58.61
AT3G01890.1	Thale cress	plastid	55.86	58.3
Bra006242.1-P	Field mustard	plastid	60.88	57.85
Zm00001d045433_P001	Maize	plastid	29.71	57.72
Solyc02g068100.2.1	Tomato	nucleus	63.81	56.07
GSMUA_Achr9P01520_001	Banana	plastid	57.32	55.58
GSMUA_Achr6P20740_001	Banana	plastid	58.37	53.97
TraesCS2D01G280300.1	Wheat	plastid	56.49	51.53
TraesCS2B01G298800.1	Wheat	plastid	56.49	51.43
TraesCS2A01G281500.1	Wheat	nucleus	56.49	51.33
KXG36804	Sorghum	plastid	57.11	51.32
Zm00001d022322_P001	Maize	plastid	56.9	51.13
Zm00001d007039_P001	Maize	plastid	56.49	50.75
PGSC0003DMT400017831	Potato	nucleus, plastid	60.25	50.44
HORVU2Hr1G068970.1	Barley	cytosol	53.35	49.23
KRH57226	Soybean	nucleus	50.42	46.98
KRH63759	Soybean	plastid	51.88	46.88
KRH54192	Soybean	plastid	51.67	46.34
KRH03955	Soybean	nucleus	49.16	44.76

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100785069	MapMan:12.4.2.2	EMBL:ACUP02011971	EnsemblPlantsGene:GLYMA_19G090700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	UniProt:K7MXF1	EnsemblPlants:KRG94519	ProteinID:KRG94519
ProteinID:KRG94519.1	ProteinID:KRG94520.1	PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	SMART:SM00151
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI000233E44B	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:32242177..32244717

Molecular Weight (calculated)

54102.9 Da

IEP (calculated)

9.863

GRAVY (calculated)

-0.498

Length

478 amino acids

Sequence
(BLAST)

001: MSMNNNNPSN PYGPSSTANP HSQITPGQGQ YPRSQAHAII QAQFQAQLQA HGLTLNPNAK RFPPKPPIHT ATTPFKQTEP APTVPARRKK HKPNEKHLPE
101: KALAILPESE IYTQLLDIEA RVDAALVRKK VDIQEALKNP PCIQKTLRIF VFNTFANQSS ADSSAPTWTL KIVGRILEDG EDPEQAGDVA AQRMMPPLYP
201: KFSAFFKRVT IYLDKRLYPD NNVISWENSR SSAAHEGFEV KRKGDREFPA QIRLEMNYML EKFMLSPALR EVLGVQVDTR ARIVSAIWHY VKARKLQIPN
301: DPSFFHCDQA LQRVFGEDKV KFTMVSQKIS QHLFPPQVIL LEHMIKLSGN SPVGSACYDV MVDVPFPIQR ELNALVANVE RTKEIDACDE SICGIIRKIH
401: EHRRRRAFFV GFSQSPLEFI KALVESQNKD LKVLLGESRH NAEKDRKSDF FKQPWVEDAI VRYLNRKPAA GSDAPGST

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.