CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94254	Soybean	nucleus	97.05	97.05
VIT_14s0068g02140.t01	Wine grape	plastid	79.01	78.28
AT5G14170.1	Thale cress	plastid	73.66	74.91
CDY58407	Canola	plastid	66.3	74.53
CDX69600	Canola	plastid	66.11	74.33
CDX78564	Canola	plastid	61.88	73.2
CDX70546	Canola	plastid	61.69	72.04
Solyc02g068100.2.1	Tomato	nucleus	71.64	71.51
Os04t0382100-01	Rice	nucleus	45.3	71.1
KRG94519	Soybean	nucleus	61.88	70.29
Bra006242.1-P	Field mustard	plastid	65.01	70.18
AT3G01890.1	Thale cress	plastid	58.93	69.87
Zm00001d045433_P001	Maize	plastid	30.57	67.48
GSMUA_Achr6P20740_001	Banana	plastid	64.09	67.31
GSMUA_Achr9P01520_001	Banana	plastid	60.96	67.14
PGSC0003DMT400017831	Potato	nucleus, plastid	65.93	62.7
KRH06950	Soybean	plastid	44.57	61.89
TraesCS2D01G280300.1	Wheat	plastid	59.3	61.45
TraesCS2A01G281500.1	Wheat	nucleus	59.3	61.22
TraesCS2B01G298800.1	Wheat	plastid	59.12	61.14
KXG36804	Sorghum	plastid	58.2	59.4
Zm00001d007039_P001	Maize	plastid	57.64	58.83
Zm00001d022322_P001	Maize	plastid	57.46	58.65
HORVU2Hr1G068970.1	Barley	cytosol	55.25	57.92
KRH57226	Soybean	nucleus	51.75	54.78
KRH63759	Soybean	plastid	52.85	54.25
KRH03955	Soybean	nucleus	52.12	53.9
KRH54192	Soybean	plastid	52.85	53.85

Protein Annotations

EMBL:ACUP02002879	EnsemblPlants:KRH57679	EnsemblPlantsGene:GLYMA_05G077800	EntrezGene:100776562	Gene3D:1.10.245.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	PFAM:PF02201	ProteinID:KRH57679	ProteinID:KRH57679.1	SEG:seg
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000233A0DA	UniProt:K7KP05	MapMan:12.4.2.2	:

Description

hypothetical protein

Coordinates

chr5:+:10321683..10325195

Molecular Weight (calculated)

60049.9 Da

IEP (calculated)

10.121

GRAVY (calculated)

-0.453

Length

543 amino acids

Sequence
(BLAST)

001: MSVNNNNPSK GIGASSSTFG NAGIPSNSIP SNPGFSQSQG QAQIPVGFQG QFPLSQAHAI VQAQSKAQAQ AQAQAAAAAH AQLQAHLQAQ GLSLNQNQAG
101: GLGVSSPSIS TPGNASGKRI PMKPPMRPVG FSPPNSFSPL RPMELTPAAR RKKQKLPEKQ LQDKVAAILP ESALYTQLLE FESRVDAALA RKKADIQEAL
201: KNPPCIQKTL RIYVFNTFAN QIRTIPKKPN VEPPTWTLKI VGRILEDGVD PDQPGVVQKS SPLYPKFSAF FKRVTISLDQ RLYPDNHIIL WENARSPAPH
301: EGFEVKRKGD KEFTVNIRLE MNYVPEKFKL SPALTEVLGI EVDTRPRIVA AIWHYVKARK LQNPNDPSYF HCDPPLQKVF GEENMKFTMV SQKISSHLFP
401: PQPILLEHKI KLSGNSPAGT ACYDVMVDVP FPIQRELSAL LANVEKNKDI ETCDEAICGI IRKIHEHRRR RAFFLGFSQS PVEFINALIE SQSRDLKLVS
501: GEPSRNAEKE RRSDFFNQPW VEDAVIRYLN RKPAAGSDAP GST

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.