Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0382100-01 | Rice | nucleus | 61.78 | 92.49 |
| Zm00001d045433_P001 | Maize | plastid | 42.86 | 90.24 |
| TraesCS2D01G280300.1 | Wheat | plastid | 79.73 | 78.82 |
| TraesCS2B01G298800.1 | Wheat | plastid | 79.73 | 78.67 |
| TraesCS2A01G281500.1 | Wheat | nucleus | 79.73 | 78.52 |
| KXG36804 | Sorghum | plastid | 74.13 | 72.18 |
| Zm00001d022322_P001 | Maize | plastid | 73.94 | 71.99 |
| Zm00001d007039_P001 | Maize | plastid | 73.75 | 71.8 |
| VIT_17s0000g01500.t01 | Wine grape | cytosol | 54.25 | 70.43 |
| GSMUA_Achr9P01520_001 | Banana | plastid | 63.32 | 66.53 |
| GSMUA_Achr6P20740_001 | Banana | plastid | 63.13 | 63.25 |
| CDY58407 | Canola | plastid | 56.56 | 60.66 |
| CDX78564 | Canola | plastid | 53.67 | 60.57 |
| CDX69600 | Canola | plastid | 56.37 | 60.46 |
| AT3G01890.1 | Thale cress | plastid | 52.51 | 59.39 |
| CDX70546 | Canola | plastid | 53.28 | 59.35 |
| VIT_14s0068g02140.t01 | Wine grape | plastid | 59.85 | 56.57 |
| AT5G14170.1 | Thale cress | plastid | 58.11 | 56.37 |
| KRH57679 | Soybean | nucleus | 57.92 | 55.25 |
| KRG94254 | Soybean | nucleus | 57.92 | 55.25 |
| Bra006242.1-P | Field mustard | plastid | 53.28 | 54.87 |
| KRG94519 | Soybean | nucleus | 49.23 | 53.35 |
| KRH06950 | Soybean | plastid | 37.84 | 50.13 |
| Solyc02g068100.2.1 | Tomato | nucleus | 52.32 | 49.82 |
| KRH57226 | Soybean | nucleus | 48.65 | 49.12 |
| KRH03955 | Soybean | nucleus | 48.65 | 48.0 |
| PGSC0003DMT400017831 | Potato | nucleus, plastid | 52.9 | 47.99 |
| PGSC0003DMT400039420 | Potato | plastid | 47.68 | 46.96 |
| KRH63759 | Soybean | plastid | 47.88 | 46.88 |
| Solyc03g111250.2.1 | Tomato | nucleus | 47.49 | 46.77 |
| KRH54192 | Soybean | plastid | 46.91 | 45.59 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G068970.1 | EnsemblPlantsGene:HORVU2Hr1G068970 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF22 |
| PFAM:PF02201 | SEG:seg | SMART:SM00151 | SUPFAM:SSF47592 | UniParc:UPI000B484F58 | UniProt:A0A287IBE5 |
| MapMan:12.4.2.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:485993184..485994855
Molecular Weight (calculated)
46820.3 Da
IEP (calculated)
9.962
GRAVY (calculated)
-0.366
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: SMAAAYKAAN SGSVDLTPAA RRNKKRKLPE KQLPDRVAAL LPESALYTQL LEFEARVDAA LARKKVDIQE ALKTPPSLQR TLRIYVFNTF ANQAPRTIPP
201: PKNGDPPTWS LKIIGRVLED GAELDPASVV PKHNPVYPKF SSFFKRVTIA LDSSLYPENP LIVWENARSA APQEGFEVKR KGDKEFLANI RLEMNYNPEK
301: FKLSQPLMEV LGVEVDTRAR VIAALWQYIK AKKLQNPSDP SYFMCDPQLK KVFGEDKMRF AMLSQKISQH LAPPPPINLE HKIKLSGNGA NSSACYDVLV
401: DVPFPLQKEM TAFLANTEKH KDIEACDEVI SASIKKIHEH RRRRAFFLGF SQSPVEFINA LIASQSKDLK LVAGEASRNI ERERRADFYN QPWVEDAVIR
501: YLNRKPPGGS DGPGAGGS
101: SMAAAYKAAN SGSVDLTPAA RRNKKRKLPE KQLPDRVAAL LPESALYTQL LEFEARVDAA LARKKVDIQE ALKTPPSLQR TLRIYVFNTF ANQAPRTIPP
201: PKNGDPPTWS LKIIGRVLED GAELDPASVV PKHNPVYPKF SSFFKRVTIA LDSSLYPENP LIVWENARSA APQEGFEVKR KGDKEFLANI RLEMNYNPEK
301: FKLSQPLMEV LGVEVDTRAR VIAALWQYIK AKKLQNPSDP SYFMCDPQLK KVFGEDKMRF AMLSQKISQH LAPPPPINLE HKIKLSGNGA NSSACYDVLV
401: DVPFPLQKEM TAFLANTEKH KDIEACDEVI SASIKKIHEH RRRRAFFLGF SQSPVEFINA LIASQSKDLK LVAGEASRNI ERERRADFYN QPWVEDAVIR
501: YLNRKPPGGS DGPGAGGS
001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW
Arabidopsis Description
CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.