CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70546	Canola	plastid	95.64	94.41
Bra006242.1-P	Field mustard	plastid	99.56	90.85
CDX69600	Canola	plastid	86.06	81.78
CDY58407	Canola	plastid	85.62	81.37
AT5G14170.1	Thale cress	plastid	88.02	75.66
Os04t0382100-01	Rice	nucleus	50.76	67.34
VIT_14s0068g02140.t01	Wine grape	plastid	76.03	63.69
Zm00001d045433_P001	Maize	plastid	33.55	62.6
KRH57679	Soybean	nucleus	73.2	61.88
KRG94254	Soybean	nucleus	72.55	61.33
KRG94519	Soybean	nucleus	63.18	60.67
GSMUA_Achr9P01520_001	Banana	plastid	65.14	60.65
GSMUA_Achr6P20740_001	Banana	plastid	64.92	57.64
Solyc02g068100.2.1	Tomato	nucleus	67.54	56.99
KRH06950	Soybean	plastid	48.37	56.78
TraesCS2D01G280300.1	Wheat	plastid	64.05	56.11
TraesCS2B01G298800.1	Wheat	plastid	64.05	56.0
TraesCS2A01G281500.1	Wheat	nucleus	64.05	55.89
KXG36804	Sorghum	plastid	63.4	54.7
Zm00001d007039_P001	Maize	plastid	63.18	54.51
Zm00001d022322_P001	Maize	plastid	62.96	54.32
HORVU2Hr1G068970.1	Barley	cytosol	60.57	53.67
PGSC0003DMT400017831	Potato	nucleus, plastid	64.92	52.19

Protein Annotations

Gene3D:1.10.245.10	MapMan:12.4.2.2	EnsemblPlants:CDX78564	ProteinID:CDX78564	ProteinID:CDX78564.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00129974001	InterPro:IPR036885	PFAM:PF02201	PANTHER:PTHR13844
PANTHER:PTHR13844:SF22	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
UniParc:UPI0004EE80B7	SEG:seg	:	:	:	:

Description

BnaA03g04760D

Coordinates

chrLK031815:-:1321649..1323877

Molecular Weight (calculated)

51562.6 Da

IEP (calculated)

9.818

GRAVY (calculated)

-0.509

Length

459 amino acids

Sequence
(BLAST)

001: MSGNNNNPQG SAPSPFRSPG MMPSASVPGG FAQSHIATNF QAPFQFTQAQ AMAQAQLMRP PSGFPNNTVS PMRTMELTPA ARKKKQKLPE KSLQERVAAI
101: LPESELYTQL LEFESRVDAA LSRKKVDIQE ALKNPPCVQK TLRIYVFNTF ANQNNNPNAD PPTWTLKIVG RILEDGVDPD TTNPLHPKFS SFFKKVQVSL
201: DQRLYPENPL ITWENSRSPA PQEGFEIKRK GNQEFAATIR LEMNYVPEKF KLSTALMDVL GIEVETRPRI IAAIWHYVKA RKLQSPNDPS FFNCDAALQK
301: VFGEQKLKFT MVSQKLSHHL SPPPPIHLEH KIKLSGSSPA VSACYDVLVD VPVTIQRDLS NLLANAEKNK EIEACDEAIC AAIRKIHEHR RRRAFFLGFS
401: QSPAEFVNAL MESQSKDLKV VAGEASRNAE RERGSDFFNQ PWVEDAVIRY LNRRPARGN

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.