Factsheet for VIT_14s0068g02140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57679	Soybean	nucleus	78.28	79.01
KRG94254	Soybean	nucleus	77.92	78.64
VIT_17s0000g01500.t01	Wine grape	cytosol	56.02	76.94
CDY58407	Canola	plastid	67.52	76.6
CDX69600	Canola	plastid	67.15	76.19
CDX78564	Canola	plastid	63.69	76.03
AT5G14170.1	Thale cress	plastid	74.09	76.03
Os04t0382100-01	Rice	nucleus	46.9	74.28
CDX70546	Canola	plastid	62.96	74.19
Solyc02g068100.2.1	Tomato	nucleus	71.9	72.43
Bra006242.1-P	Field mustard	plastid	66.06	71.97
AT3G01890.1	Thale cress	plastid	58.94	70.52
GSMUA_Achr9P01520_001	Banana	plastid	62.59	69.57
Zm00001d045433_P001	Maize	plastid	31.02	69.11
GSMUA_Achr6P20740_001	Banana	plastid	64.42	68.28
KRG94519	Soybean	nucleus	59.12	67.78
TraesCS2D01G280300.1	Wheat	plastid	61.13	63.93
TraesCS2B01G298800.1	Wheat	plastid	61.13	63.81
TraesCS2A01G281500.1	Wheat	nucleus	61.13	63.69
PGSC0003DMT400017831	Potato	nucleus, plastid	65.88	63.22
KXG36804	Sorghum	plastid	60.77	62.59
Zm00001d007039_P001	Maize	plastid	60.22	62.03
KRH06950	Soybean	plastid	43.61	61.13
Zm00001d022322_P001	Maize	plastid	59.31	61.09
HORVU2Hr1G068970.1	Barley	cytosol	56.57	59.85

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100261825	wikigene:100261825	MapMan:12.4.2.2	EMBL:AM440955	ProteinID:CAN60756
ProteinID:CAN60756.1	ProteinID:CCB47026	ProteinID:CCB47026.1	UniProt:F6H3Y6	EMBL:FN595232	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	EntrezGene:LOC100261825	wikigene:LOC100261825	PFAM:PF02201
PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI00015C82BA	ArrayExpress:VIT_14s0068g02140	EnsemblPlantsGene:VIT_14s0068g02140	EnsemblPlants:VIT_14s0068g02140.t01	unigene:Vvi.12419
RefSeq:XP_002273749	RefSeq:XP_002273749.1	RefSeq:XP_010660759.1	RefSeq:XP_010660761.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:25733976..25736943

Molecular Weight (calculated)

60628.8 Da

IEP (calculated)

10.123

GRAVY (calculated)

-0.472

Length

548 amino acids

Sequence
(BLAST)

001: MAVNNNNPPK NLGASSSPFG NAGMGSPAMP ANPVFSQPQA QGQIGGGFQG QFQLSQAHQA HVIAQAHSKA QAHAQAQAQA AHAQFQAQLQ AQGMTLNQSQ
101: GIGIGNMGGS SPSIGAPGNS NMKRTLQKPP VRPPGPLGAN TISPLKVMEL TPAARRKKQK LPEKQLQDRV AAILPESALY TQLLEFESRV DAALARKKID
201: IQEALKNPPC VQKTLRIYIF NTFANQIRTI PKKPNAEPPT WTLKIIGRIL EEGVDPDQAA MLHKSNVSYP KFSSFFKRVT ISLDQRLYPD NPIIIWENAR
301: SPAPHEGFEV KRKGDKEFTV NIRLEMNYVP EKFKLSSALM EVLGIEVDTR PRIIAAIWHY VKARKLQNPN DPSFFNCDPP LQKVFGEDKM KFTMVSQKIS
401: QHLSPPQPIH LEHKIKLSGN CPAGNACYDV LVDVPFPIQK ELSALLANTE KNKEIDACDE AICSAIRKIH EHRRRRAFFL GFSQSPVEFI NTLIESQSKD
501: LKLVAGEASR NAEKERRSDF FNQPWVEDAV IRYLNRKPVA GSDAPGST

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.