CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007039_P001	Maize	plastid	97.56	97.56
Zm00001d045433_P001	Maize	plastid	44.17	95.53
Os04t0382100-01	Rice	nucleus	61.09	93.93
Zm00001d022322_P001	Maize	plastid	88.16	88.16
TraesCS2D01G280300.1	Wheat	plastid	85.71	87.02
TraesCS2A01G281500.1	Wheat	nucleus	85.9	86.88
TraesCS2B01G298800.1	Wheat	plastid	85.53	86.67
HORVU2Hr1G068970.1	Barley	cytosol	72.18	74.13
GSMUA_Achr9P01520_001	Banana	plastid	65.79	70.99
VIT_17s0000g01500.t01	Wine grape	cytosol	53.2	70.93
GSMUA_Achr6P20740_001	Banana	plastid	68.23	70.21
CDX78564	Canola	plastid	54.7	63.4
CDY58407	Canola	plastid	57.33	63.15
AT3G01890.1	Thale cress	plastid	54.32	63.1
CDX69600	Canola	plastid	56.95	62.73
CDX70546	Canola	plastid	54.51	62.37
VIT_14s0068g02140.t01	Wine grape	plastid	62.59	60.77
AT5G14170.1	Thale cress	plastid	60.71	60.49
KRH57679	Soybean	nucleus	59.4	58.2
KRG94254	Soybean	nucleus	59.4	58.2
Bra006242.1-P	Field mustard	plastid	54.7	57.85
KRG94519	Soybean	nucleus	51.32	57.11
Solyc02g068100.2.1	Tomato	nucleus	56.2	54.96
KRH57226	Soybean	nucleus	51.13	53.02
KRH06950	Soybean	plastid	38.91	52.94
KRH03955	Soybean	nucleus	51.5	52.19
PGSC0003DMT400017831	Potato	nucleus, plastid	55.64	51.84
PGSC0003DMT400039420	Potato	plastid	50.38	50.95
Solyc03g111250.2.1	Tomato	nucleus	50.38	50.95
KRH63759	Soybean	plastid	48.12	48.39
KRH54192	Soybean	plastid	48.12	48.03

Protein Annotations

EnsemblPlants:KXG36804	EnsemblPlantsGene:SORBI_3002G394800	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22
PFAM:PF02201	ProteinID:KXG36804	ProteinID:KXG36804.1	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI00081AE97C	UniProt:A0A1B6QFW1	MapMan:12.4.2.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:74746871..74748881

Molecular Weight (calculated)

58120.7 Da

IEP (calculated)

10.272

GRAVY (calculated)

-0.485

Length

532 amino acids

Sequence
(BLAST)

001: MASGGNPNPT GAPTQPRPPH PQQQPQPGGS PATPMTHLRP PSHAGSPFQG LFHTPPTHNP AFQIHMGASS SPQTPLMPAT AGSAKRPPQK PPVRPPAPGS
101: TSSAAAASAA AAYKAAAAAA AVANSGGVDL TPAARRNKKR KLPEKQLPDR VAALLPESAL YTQLLEFEAR VDAALARKKV DIQEALKTPP SLQRTLRIYV
201: FNTFANQGPR TIPPPKNADP PTWSLKIIGR VLEDGAELDP ASVVPKHNPV YPKFSQFFKR VTIALDPSLY PENPLIIWEN ARTAAQQEGF EVKRKGDKEF
301: VANIRLEMNY NPEKFKLSPP LMEVLGVEVD TRARVIAALW QYIKAKKLQN PNDPSFFMCD PQLKKVFGED KLKFAMLSQK ISQHLTAPPP INLEHKIKLS
401: GNGAHSSACY DVLVDVPFPL QKEMMAFLAN TEKHKDIEAC DEVISASIKK IHEHRRRRAF FLGFSQSPVE FINALIASQS KDLKLVAGEA NRNIEKERRA
501: DFYNQPWVED AVIRYLNRKP ANEGSGGGAG GS

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.