CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03955	Soybean	nucleus	89.86	87.81
VIT_17s0000g01500.t01	Wine grape	cytosol	51.07	65.66
Os04t0382100-01	Rice	nucleus	42.11	62.43
GSMUA_Achr9P01520_001	Banana	plastid	52.63	54.77
KRH63759	Soybean	plastid	56.14	54.44
KRH54192	Soybean	plastid	56.14	54.03
TraesCS2D01G280300.1	Wheat	plastid	53.61	52.48
TraesCS2B01G298800.1	Wheat	plastid	53.61	52.38
TraesCS2A01G281500.1	Wheat	nucleus	53.61	52.28
KRH57679	Soybean	nucleus	54.78	51.75
GSMUA_Achr6P20740_001	Banana	plastid	52.05	51.64
Zm00001d022322_P001	Maize	plastid	53.22	51.32
KXG36804	Sorghum	plastid	53.02	51.13
KRG94254	Soybean	nucleus	54.0	51.01
Zm00001d045433_P001	Maize	plastid	24.37	50.81
Zm00001d007039_P001	Maize	plastid	52.44	50.56
KRG94519	Soybean	nucleus	46.98	50.42
PGSC0003DMT400039420	Potato	plastid	50.68	49.43
HORVU2Hr1G068970.1	Barley	cytosol	49.12	48.65
Solyc03g111250.2.1	Tomato	nucleus	49.51	48.29
KRH06950	Soybean	plastid	35.87	47.06

Protein Annotations

EMBL:ACUP02002822	EnsemblPlants:KRH57226	EnsemblPlantsGene:GLYMA_05G047600	EntrezGene:100790947	Gene3D:1.10.245.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	PFAM:PF02201	ProteinID:KRH57226	ProteinID:KRH57226.1	SEG:seg
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000233A104	UniProt:I1K0A7	MapMan:12.4.2.2	:

Description

hypothetical protein

Coordinates

chr5:-:4245053..4248447

Molecular Weight (calculated)

57379.0 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.599

Length

513 amino acids

Sequence
(BLAST)

001: MNNTNPTKNA ATPSFFTNPG TPSIPMNHLL SQTQPQPQGA TSHFHGHFQL SQPQTHVLAP QQQPHPHPHP QVHNNANTNA HVAAPTPPKR ASQKPPSRPQ
101: GSSNASQSSA FKTMELTVAP PRKKRSFPYN KVVPEKVAKL VPESAIYAKL LGLETQIDSA LARKKIDVQE NVRNPRCVRK TLRVYVYNTF SNQVKVEPGK
201: NGVEEPSWAL RITGRVLEDG KDSVAEGIST KEYPKFSAFF KKITIYLDQG LYQDNHVVVW DSARSAAAQQ RDGFEVKRKG DKEFTAVVRM AMNYSPDKFV
301: VSPQLARVLG VEFDSRARII AALWHYVKAK KLQSPNDPSF FMCDTSLQKV FGEDKMKFSV ASQKISQHLS QPRPIHLEHK IKLSGNGPAG STCYDVQVDV
401: PLPLEKDMSA FLASTERHKD IDAFDELICD SIKKIHEHHR RRAFFLGFSQ SPAEFINALI ASQSKDLKLV AGDVSQNTEN EQCAEFYNQP WVEDAVVRYL
501: TRKNARSDAP GNI

Best Arabidopsis Sequence Match ( AT3G01890.1 )
(BLAST)

001: MSGNNELNAL KGPQSSLPWP FGMASASFAP SHMAPPNFQP QFQLSQDQGI SAPGRRFPHK PPIGGPPAVP PSMELTPASR KKKHKLPDKS SLQERVAAVL
101: PESALYTQLL EFESRVDAAL FRKKVDIQDS LKNPPSIQKT LRIYVFNTFS NQIPGPDPPT WTLRIFGRVL DPDHTGGLVQ NSNPLYPKFS SFFKTLKISL
201: DQSLYPENHL IEWKRDRSPA PLEGFEIKRI GCQEFAATIL LEMNYVPEKF KTSPALMQVL GIEVDTRPRI IAAIWHYVKV RKLQNPNDPS FFNCDAALHS
301: VFGEEKMKFT MLSHKISQHL SPPPPIQLVH KIKLSGNNPA ISACYDVLVD IPAPVQTELS NLLANPEKNK EIEACDEAIC GAIRKIHEHR RRRAFFLGFS
401: QSPVEFTNAL MESQTKDLKL VAGEASRNAE KEGRSEFFNQ PWVEDAAIRY LNRKPAGG

Arabidopsis Description

At3g01890 [Source:UniProtKB/TrEMBL;Acc:Q147F4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.