CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57226	Soybean	nucleus	87.81	89.86
VIT_17s0000g01500.t01	Wine grape	cytosol	49.9	65.66
Os04t0382100-01	Rice	nucleus	41.33	62.72
GSMUA_Achr9P01520_001	Banana	plastid	50.86	54.16
KRH54192	Soybean	plastid	54.86	54.03
KRH63759	Soybean	plastid	54.1	53.69
TraesCS2D01G280300.1	Wheat	plastid	52.57	52.67
TraesCS2B01G298800.1	Wheat	plastid	52.57	52.57
TraesCS2A01G281500.1	Wheat	nucleus	52.57	52.47
KRH57679	Soybean	nucleus	53.9	52.12
KRG94254	Soybean	nucleus	53.33	51.57
KXG36804	Sorghum	plastid	52.19	51.5
GSMUA_Achr6P20740_001	Banana	plastid	50.67	51.45
Zm00001d007039_P001	Maize	plastid	51.43	50.75
Zm00001d022322_P001	Maize	plastid	51.24	50.56
Zm00001d045433_P001	Maize	plastid	23.43	50.0
KRG94519	Soybean	nucleus	44.76	49.16
PGSC0003DMT400039420	Potato	plastid	49.14	49.05
HORVU2Hr1G068970.1	Barley	cytosol	48.0	48.65
Solyc03g111250.2.1	Tomato	nucleus	48.0	47.91
KRH06950	Soybean	plastid	34.67	46.55

Protein Annotations

EMBL:ACUP02010369	EnsemblPlants:KRH03955	EnsemblPlantsGene:GLYMA_17G129500	EntrezGene:100817271	Gene3D:1.10.245.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	PFAM:PF02201	ProteinID:KRH03955	ProteinID:KRH03955.1	SEG:seg
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000233EF65	UniProt:I1MUP5	MapMan:12.4.2.2	:

Description

hypothetical protein

Coordinates

chr17:-:10375929..10379136

Molecular Weight (calculated)

58865.6 Da

IEP (calculated)

10.001

GRAVY (calculated)

-0.652

Length

525 amino acids

Sequence
(BLAST)

001: MNNTNNINNI NTNPTKNAAT PSFFTNPGAP SIPMNHPQPH LLSQTQPQPQ GATSHFHGHF QLSQPQTHVV AQQQHQQQQP HPHPQVHNNA NTNAHVAAPT
101: PPKRANQKPP SRPQGSSNAT QSSAFKTMEL TVAPPRKKRS FPGNLIPEKV AKLVPESAIY AKLLELETQI DSALARKKID VQANVRNPRC VRKTLRVYVY
201: NTFSNQVKVE TGKNGVEEPS WALRITGRVL EDGNGKDSVA EGISTKEYPK FSAFFKKITI YLDQGLYQDN HVVVWDSAHS AAAQQRDGFE VKRKGDKEFT
301: AVVRMAMNYS PDKFVVSPQL ARVLGVEFDS RCRIIAALWH YVKAKKLQSP NDPSFFMCDA SLQRVFGEEK MKFSVASQKI SQHLSHPQPI HLEHKIKLSG
401: NGPAGSTCYD VQVDVPLPLE KDMSAFLAST ERHKDIDTFD ELISDSIKKI HEHHRRRAFF LGFSQSPAEF INALIASQSK DLKLVAGDVS QNTENERRAE
501: FYNQPWVEDA VIRYLTRKNA RSDAP

Best Arabidopsis Sequence Match ( AT3G01890.1 )
(BLAST)

001: MSGNNELNAL KGPQSSLPWP FGMASASFAP SHMAPPNFQP QFQLSQDQGI SAPGRRFPHK PPIGGPPAVP PSMELTPASR KKKHKLPDKS SLQERVAAVL
101: PESALYTQLL EFESRVDAAL FRKKVDIQDS LKNPPSIQKT LRIYVFNTFS NQIPGPDPPT WTLRIFGRVL DPDHTGGLVQ NSNPLYPKFS SFFKTLKISL
201: DQSLYPENHL IEWKRDRSPA PLEGFEIKRI GCQEFAATIL LEMNYVPEKF KTSPALMQVL GIEVDTRPRI IAAIWHYVKV RKLQNPNDPS FFNCDAALHS
301: VFGEEKMKFT MLSHKISQHL SPPPPIQLVH KIKLSGNNPA ISACYDVLVD IPAPVQTELS NLLANPEKNK EIEACDEAIC GAIRKIHEHR RRRAFFLGFS
401: QSPVEFTNAL MESQTKDLKL VAGEASRNAE KEGRSEFFNQ PWVEDAAIRY LNRKPAGG

Arabidopsis Description

At3g01890 [Source:UniProtKB/TrEMBL;Acc:Q147F4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.