CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63759	Soybean	plastid	88.93	89.6
VIT_17s0000g01500.t01	Wine grape	cytosol	48.22	64.41
Os04t0382100-01	Rice	nucleus	37.9	58.38
KRH57226	Soybean	nucleus	54.03	56.14
KRH03955	Soybean	nucleus	54.03	54.86
GSMUA_Achr9P01520_001	Banana	plastid	50.09	54.16
Zm00001d045433_P001	Maize	plastid	24.77	53.66
KRH57679	Soybean	nucleus	53.85	52.85
KRG94254	Soybean	nucleus	53.85	52.85
KRG94519	Soybean	nucleus	46.34	51.67
GSMUA_Achr6P20740_001	Banana	plastid	49.72	51.26
TraesCS2D01G280300.1	Wheat	plastid	48.59	49.43
TraesCS2B01G298800.1	Wheat	plastid	48.59	49.33
TraesCS2A01G281500.1	Wheat	nucleus	48.59	49.24
Solyc03g111250.2.1	Tomato	nucleus	48.03	48.67
KXG36804	Sorghum	plastid	48.03	48.12
PGSC0003DMT400039420	Potato	plastid	47.47	48.1
Zm00001d007039_P001	Maize	plastid	47.65	47.74
KRH06950	Soybean	plastid	34.9	47.57
Zm00001d022322_P001	Maize	plastid	47.28	47.37
HORVU2Hr1G068970.1	Barley	cytosol	45.59	46.91

Protein Annotations

EMBL:ACUP02003508	EnsemblPlants:KRH54192	EnsemblPlantsGene:GLYMA_06G170800	EntrezGene:100802455	Gene3D:1.10.245.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	PFAM:PF02201	ProteinID:KRH54192	ProteinID:KRH54192.1	SEG:seg
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0002338629	UniProt:I1KC40	MapMan:12.4.2.2	:

Description

hypothetical protein

Coordinates

chr6:-:14295470..14298499

Molecular Weight (calculated)

59823.9 Da

IEP (calculated)

9.116

GRAVY (calculated)

-0.526

Length

533 amino acids

Sequence
(BLAST)

001: MNNQAKNIAT SSLFGHSGMA PQPQPHHPNP IQQWNHPNPL LSQSQSHPQT QFHGLFQFSE PQSQVFAQAQ YAQAQLQSQA ARAHPQVPQT QPFAHLHNVK
101: TNTANGVSSL GTGSAKRATL KPPLRSHNSL NMNQSTPFKA TKLTPAVLQK KQIPEKVAAL LPESALYTQL LDFEAQVDAS LARRKIDIQE TKLPPHVQKT
201: LRVYVFNTFS NHAKMDADNR KADDESWWSL KIIGRILEDG VDSMSGISQG SSPSYPKFSA FFKKITILLD QSLYPDNHVT VWDSARSPTQ QDGFEVKRKG
301: NKEFTAVIAI EMNYTPDKFM VSPPLSKLLG IEVETRPRII ATLSNYVKSR KLQIPNDPSF FICDPSLQMV FGEEKMDFTM VSQKLAQHLT QPQPIHMEHN
401: IKLSGHSPAV SACYDIQVDV PFPLEKDMST FLAGFESQKE IEAYDEAIRT SLKKIQEHHR RRAFFLSFSQ SPAEFIDTLI ASQSKDLKLV AGDASHNVQK
501: ELPSEFFNQP WVEDAVIRYL NRKSAGSDAH GHN

Best Arabidopsis Sequence Match ( AT3G01890.1 )
(BLAST)

001: MSGNNELNAL KGPQSSLPWP FGMASASFAP SHMAPPNFQP QFQLSQDQGI SAPGRRFPHK PPIGGPPAVP PSMELTPASR KKKHKLPDKS SLQERVAAVL
101: PESALYTQLL EFESRVDAAL FRKKVDIQDS LKNPPSIQKT LRIYVFNTFS NQIPGPDPPT WTLRIFGRVL DPDHTGGLVQ NSNPLYPKFS SFFKTLKISL
201: DQSLYPENHL IEWKRDRSPA PLEGFEIKRI GCQEFAATIL LEMNYVPEKF KTSPALMQVL GIEVDTRPRI IAAIWHYVKV RKLQNPNDPS FFNCDAALHS
301: VFGEEKMKFT MLSHKISQHL SPPPPIQLVH KIKLSGNNPA ISACYDVLVD IPAPVQTELS NLLANPEKNK EIEACDEAIC GAIRKIHEHR RRRAFFLGFS
401: QSPVEFTNAL MESQTKDLKL VAGEASRNAE KEGRSEFFNQ PWVEDAAIRY LNRKPAGG

Arabidopsis Description

At3g01890 [Source:UniProtKB/TrEMBL;Acc:Q147F4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.