Factsheet for Zm00001d007039_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

plastid: 22065420
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36804	Sorghum	plastid	97.56	97.56
Zm00001d045433_P001	Maize	plastid	44.55	96.34
Os04t0382100-01	Rice	nucleus	60.9	93.64
Zm00001d022322_P001	Maize	plastid	87.59	87.59
TraesCS2D01G280300.1	Wheat	plastid	84.96	86.26
TraesCS2A01G281500.1	Wheat	nucleus	85.15	86.12
TraesCS2B01G298800.1	Wheat	plastid	84.77	85.9
HORVU2Hr1G068970.1	Barley	cytosol	71.8	73.75
VIT_17s0000g01500.t01	Wine grape	cytosol	53.01	70.68
GSMUA_Achr9P01520_001	Banana	plastid	64.66	69.78
GSMUA_Achr6P20740_001	Banana	plastid	67.29	69.25
CDX78564	Canola	plastid	54.51	63.18
CDY58407	Canola	plastid	57.14	62.94
CDX69600	Canola	plastid	56.77	62.53
AT3G01890.1	Thale cress	plastid	53.57	62.23
CDX70546	Canola	plastid	54.32	62.15
VIT_14s0068g02140.t01	Wine grape	plastid	62.03	60.22
AT5G14170.1	Thale cress	plastid	60.15	59.93
Bra006242.1-P	Field mustard	plastid	54.51	57.65
KRH57679	Soybean	nucleus	58.83	57.64
KRG94254	Soybean	nucleus	58.83	57.64
KRG94519	Soybean	nucleus	50.75	56.49
Solyc02g068100.2.1	Tomato	nucleus	55.08	53.86
KRH57226	Soybean	nucleus	50.56	52.44
KRH06950	Soybean	plastid	38.35	52.17
KRH03955	Soybean	nucleus	50.75	51.43
PGSC0003DMT400017831	Potato	nucleus, plastid	54.89	51.14
PGSC0003DMT400039420	Potato	plastid	49.62	50.19
Solyc03g111250.2.1	Tomato	nucleus	49.62	50.19
KRH63759	Soybean	plastid	48.31	48.58
KRH54192	Soybean	plastid	47.74	47.65

Protein Annotations

Gene3D:1.10.245.10	MapMan:12.4.2.2	UniProt:A0A1D6F2G1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	ProteinID:ONM25620.1	PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	SMART:SM00151
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI000221FE34	EnsemblPlantsGene:Zm00001d007039
EnsemblPlants:Zm00001d007039_P001	EnsemblPlants:Zm00001d007039_T001	SEG:seg	:	:	:

Description

SWI/SNF complex component SNF12 homolog

Coordinates

chr2:+:220650818..220653048

Molecular Weight (calculated)

58331.0 Da

IEP (calculated)

10.236

GRAVY (calculated)

-0.462

Length

532 amino acids

Sequence
(BLAST)

001: MSSGGNPNPT GAPTQPRPMH QQQQPQTGGS PATPMTHLRP PSLAGSPFQG LFHTPPTHNP AFQIHMGASS SPQTPLMAAT AGSAKRPPQK PPVRPLAPGS
101: TSSAAAASAA AAYKAAAAAA AVANSGGVDL TPAARRNKKR KLPEKQLPDR VAALLPESAL YTQLLEFEAR VDAALARKKV DIQEALKTPP SLQRTLRIYV
201: FNTFANQGPR TIPPPKNADP PTWSLKIIGR VLEDGAELDP SSVVPKHNPV YPKFSQFFKR VTIALDPSLY PENPLIIWEN ARTAAQQEGF EVKRKGDKEF
301: VANIRLEMNY NPEKFKLSQP LMEVLGVEVD TRARVIAALW QYIKAKKLQN PNDPSFFMCD PQLKKVFGED KLKFAMLSQR ISQHLSAPPP INLEHKIKLS
401: GNEAHSSACY DVLVDVPFPL QKEMMAFLAN TEKHKDIEAC DEVISASIKK IHEHRRRRAF FLGFSQSPVE FINALIASQS KDLKLVAGEA NRNIEKERRA
501: DFYNQPWVED AVIRYLNRKP ANEGLGGGAG GS

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.