Factsheet for Zm00001d045433_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0382100-01	Rice	nucleus	64.63	45.95
Zm00001d007039_P001	Maize	plastid	96.34	44.55
KXG36804	Sorghum	plastid	95.53	44.17
Zm00001d022322_P001	Maize	plastid	94.72	43.8
HORVU2Hr1G068970.1	Barley	cytosol	90.24	42.86
TraesCS2D01G280300.1	Wheat	plastid	90.24	42.37
TraesCS2B01G298800.1	Wheat	plastid	90.24	42.29
TraesCS2A01G281500.1	Wheat	nucleus	90.24	42.21
VIT_17s0000g01500.t01	Wine grape	cytosol	61.79	38.1
GSMUA_Achr9P01520_001	Banana	plastid	71.54	35.7
GSMUA_Achr6P20740_001	Banana	plastid	74.39	35.4
CDX78564	Canola	plastid	62.6	33.55
CDX70546	Canola	plastid	62.2	32.9
CDY58407	Canola	plastid	64.23	32.71
CDX69600	Canola	plastid	64.23	32.71
AT3G01890.1	Thale cress	plastid	59.76	32.1
AT5G14170.1	Thale cress	plastid	67.89	31.27
VIT_14s0068g02140.t01	Wine grape	plastid	69.11	31.02
KRG94254	Soybean	nucleus	67.89	30.76
KRH57679	Soybean	nucleus	67.48	30.57
Bra006242.1-P	Field mustard	plastid	61.79	30.22
KRG94519	Soybean	nucleus	57.72	29.71
Solyc03g111250.2.1	Tomato	nucleus	58.13	27.19
Solyc02g068100.2.1	Tomato	nucleus	59.76	27.02
PGSC0003DMT400039420	Potato	plastid	57.32	26.81
PGSC0003DMT400017831	Potato	nucleus, plastid	60.57	26.09
KRH63759	Soybean	plastid	53.66	24.95
KRH54192	Soybean	plastid	53.66	24.77
KRH06950	Soybean	plastid	39.02	24.55
KRH57226	Soybean	nucleus	50.81	24.37
KRH03955	Soybean	nucleus	50.0	23.43

Protein Annotations

EnsemblPlants:Zm00001d045433_P001	EnsemblPlants:Zm00001d045433_T001	EnsemblPlantsGene:Zm00001d045433	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22
PFAM:PF02201	ProteinID:AQL02260.1	SEG:seg	SUPFAM:SSF47592	UniParc:UPI0008424798	UniProt:A0A1D6NVW8
MapMan:12.4.2.2	:	:	:	:	:

Description

SWI/SNF complex component SNF12 homolog

Coordinates

chr9:-:21985593..21989322

Molecular Weight (calculated)

27748.5 Da

IEP (calculated)

10.162

GRAVY (calculated)

-0.401

Length

246 amino acids

Sequence
(BLAST)

001: MITTASAAAV ANSGGVDLTP AVRRNKKRKL PEKQLPDRVD ALLPESALYT QLLEFEARVD TALARKKVDI QEALKTPPSL QRTLRIYVFN TFANQGPRTI
101: PPPKNADPPT WSLKIIGRVL EDGAELDPSS VVPKHNPVYP KFSQFFKRVT IALDPSLYPE NPLIIWENAR TAAQQEGFEV KRKGDKEFVA NIRLEMNYNP
201: EKFKLSQPLM EVLGVEVDTR ARVIAALWQY IKAKKLQNPN DPSFFI

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.