Factsheet for Solyc02g068100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017831	Potato	nucleus, plastid	83.09	79.16
VIT_14s0068g02140.t01	Wine grape	plastid	72.43	71.9
KRG94254	Soybean	nucleus	71.51	71.64
KRH57679	Soybean	nucleus	71.51	71.64
CDY58407	Canola	plastid	62.32	70.19
CDX69600	Canola	plastid	62.13	69.98
AT5G14170.1	Thale cress	plastid	68.2	69.48
CDX78564	Canola	plastid	56.99	67.54
CDX70546	Canola	plastid	56.99	66.67
Os04t0382100-01	Rice	nucleus	41.73	65.61
AT3G01890.1	Thale cress	plastid	54.23	64.41
Bra006242.1-P	Field mustard	plastid	59.01	63.82
KRG94519	Soybean	nucleus	56.07	63.81
GSMUA_Achr9P01520_001	Banana	plastid	56.8	62.68
GSMUA_Achr6P20740_001	Banana	plastid	58.82	61.9
Zm00001d045433_P001	Maize	plastid	27.02	59.76
KRH06950	Soybean	plastid	41.91	58.31
TraesCS2D01G280300.1	Wheat	plastid	54.96	57.06
TraesCS2B01G298800.1	Wheat	plastid	54.96	56.95
TraesCS2A01G281500.1	Wheat	nucleus	54.96	56.84
KXG36804	Sorghum	plastid	54.96	56.2
Zm00001d022322_P001	Maize	plastid	54.04	55.26
Zm00001d007039_P001	Maize	plastid	53.86	55.08
HORVU2Hr1G068970.1	Barley	cytosol	49.82	52.32
Solyc03g111250.2.1	Tomato	nucleus	50.55	52.28

Protein Annotations

EnsemblPlants:Solyc02g068100.2.1	EnsemblPlantsGene:Solyc02g068100.2	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000276775A	UniProt:K4B7E2
MapMan:12.4.2.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:38148629..38151669

Molecular Weight (calculated)

60548.2 Da

IEP (calculated)

10.110

GRAVY (calculated)

-0.556

Length

544 amino acids

Sequence
(BLAST)

001: MSVNNNNNPN KNIGGPSSFG NSPPGNPMAH LQAQSQGQQQ MPSGFPGAFQ LSQLSAAHAQ AIAQAQSKVQ AHAQAQAQAQ AAHAQFQAQL QAQGLSLSQA
101: HALGNFGSSS PSMPGSALAK RLPQKPPVRP PAFTTTNTIS PMRTMELSAA ARRKKQKLPE KHMNEKVAAI LPESSLYTQL LEFESRVDSA LTRKKVDIQE
201: SLKNPPTIQK TLRIYVFNSF ANQVRTIPKK PTAEPPTWTL KIVGRILEEG MDPDQAAMFQ KTSSMYPKFS TFFKRVTISL DQKLYPDNHI IIWDSARSPA
301: PQDGFEVKRK GEQEFTANLR LELNYMPEKY KLSPALTEVL GIEVETRARI VSSIWHYVKA RKLQNPDDPS YFNCDPPLQK VFGEGKVKFN TVTQKITPHL
401: SPPQPIHLEH RIKLSGNNPV GTACYDVLVD VPFPIQRELN ALLANTEKTK EIETCDEAIC SAIRKIHEHR RRRAFFLGFS QSPVEFIDAL LESQSKDLKV
501: VSGEPSRNVE KERRSQFYSQ PWVEDAVIRY LNRKPAAADA PGSG

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.