CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69600	Canola	plastid	98.76	98.76
CDX78564	Canola	plastid	81.37	85.62
CDX70546	Canola	plastid	81.16	84.3
AT5G14170.1	Thale cress	plastid	89.86	81.27
Os04t0382100-01	Rice	nucleus	50.93	71.1
VIT_14s0068g02140.t01	Wine grape	plastid	76.6	67.52
KRG94254	Soybean	nucleus	74.74	66.48
KRH57679	Soybean	nucleus	74.53	66.3
Zm00001d045433_P001	Maize	plastid	32.71	64.23
KRG94519	Soybean	nucleus	62.53	63.18
Solyc02g068100.2.1	Tomato	nucleus	70.19	62.32
GSMUA_Achr9P01520_001	Banana	plastid	63.15	61.87
GSMUA_Achr6P20740_001	Banana	plastid	64.39	60.15
TraesCS2D01G280300.1	Wheat	plastid	63.77	58.78
TraesCS2B01G298800.1	Wheat	plastid	63.77	58.67
TraesCS2A01G281500.1	Wheat	nucleus	63.77	58.56
KRH06950	Soybean	plastid	47.0	58.06
Zm00001d022322_P001	Maize	plastid	63.56	57.71
KXG36804	Sorghum	plastid	63.15	57.33
Zm00001d007039_P001	Maize	plastid	62.94	57.14
HORVU2Hr1G068970.1	Barley	cytosol	60.66	56.56
PGSC0003DMT400017831	Potato	nucleus, plastid	66.25	56.04

Protein Annotations

Gene3D:1.10.245.10	MapMan:12.4.2.2	UniProt:A0A078J3I8	EnsemblPlants:CDY58407	ProteinID:CDY58407	ProteinID:CDY58407.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00023582001	InterPro:IPR036885	PFAM:PF02201
PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI0004EF080C	SEG:seg	:	:	:

Description

BnaC09g54540DBnaC09g54540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3I8]

Coordinates

chrLK033666:+:12783..14968

Molecular Weight (calculated)

53964.2 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.550

Length

483 amino acids

Sequence
(BLAST)

001: MSANNNNPQK PQQGSAPSPF GGNPGMASPS VVPGNQGFTQ SHMSPNFPAQ FQFSQAQAMA HAQAQAQSKA QAHNNTVSPM RTMELTPAAR KKKMKLPEKS
101: LQERVAAILP ESALYTQLLE FESRVDAALS RKKVDIQEAL KNPPCTQKTL RIYVFNSFAN QNNTIPGNPN ADPPTWTLKI VGRILEDGVD PDQPGFVQQA
201: NPSHPKFSSF FKKVIVNLDQ RLYPENSAIT WESARSPAPQ EGFEIKRKGN QEFAATIRLE MNYVPEKFKL STALMDVLGI EVETRPRIIS AIWHYVKARK
301: LQNPNDPSFF NCDAALHKVF GEEKVKFTMV SQKISHHLSP PPPIHLEHKI KLSGNNPAIS ACYDVLVDVP FPIQRDLNNL LANAEKNKEI EACDEAICAA
401: IRKIHEHRRR RAFFLGFSQS PVEFINALIE SQSKDLKVVA GEASRNAEKE RRADFFNQPW VEDAVIRYLN RKPAAGNEGP GTW

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.