Factsheet for GSMUA_Achr6P20740_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P01520_001	Banana	plastid	83.75	87.83
Os04t0382100-01	Rice	nucleus	53.38	79.77
Zm00001d045433_P001	Maize	plastid	35.4	74.39
VIT_17s0000g01500.t01	Wine grape	cytosol	56.48	73.18
TraesCS2D01G280300.1	Wheat	plastid	69.83	68.89
TraesCS2A01G281500.1	Wheat	nucleus	69.83	68.63
TraesCS2B01G298800.1	Wheat	plastid	69.63	68.57
KXG36804	Sorghum	plastid	70.21	68.23
Zm00001d007039_P001	Maize	plastid	69.25	67.29
Zm00001d022322_P001	Maize	plastid	68.28	66.35
CDX78564	Canola	plastid	57.64	64.92
VIT_14s0068g02140.t01	Wine grape	plastid	68.28	64.42
CDX69600	Canola	plastid	60.15	64.39
CDY58407	Canola	plastid	60.15	64.39
KRH57679	Soybean	nucleus	67.31	64.09
CDX70546	Canola	plastid	57.25	63.66
KRG94254	Soybean	nucleus	66.54	63.35
HORVU2Hr1G068970.1	Barley	cytosol	63.25	63.13
AT5G14170.1	Thale cress	plastid	64.41	62.36
AT3G01890.1	Thale cress	plastid	54.35	61.35
Bra006242.1-P	Field mustard	plastid	58.61	60.24
Solyc02g068100.2.1	Tomato	nucleus	61.9	58.82
KRG94519	Soybean	nucleus	53.97	58.37
PGSC0003DMT400017831	Potato	nucleus, plastid	59.96	54.29
PGSC0003DMT400039420	Potato	plastid	54.93	53.99
Solyc03g111250.2.1	Tomato	nucleus	54.93	53.99
KRH06950	Soybean	plastid	40.04	52.94
KRH57226	Soybean	nucleus	51.64	52.05
KRH03955	Soybean	nucleus	51.45	50.67
KRH63759	Soybean	plastid	51.84	50.66
KRH54192	Soybean	plastid	51.26	49.72

Protein Annotations

EnsemblPlants:GSMUA_Achr6P20740_001	EnsemblPlants:GSMUA_Achr6T20740_001	EnsemblPlantsGene:GSMUA_Achr6G20740_001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF22	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000296388F
UniProt:M0T8S2	MapMan:12.4.2.2	:	:	:	:

Description

SWI/SNF complex component SNF12 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr6G20740_001]

Coordinates

chr6:-:15523213..15524887

Molecular Weight (calculated)

57134.5 Da

IEP (calculated)

10.196

GRAVY (calculated)

-0.493

Length

517 amino acids

Sequence
(BLAST)

001: MASNSNNQPR AVGGSPSLAN SGMGLPASAN PPSHLRPPPA PGPSPFQGLF HSQTQSQAQP QVHSPFQIHM GSQSHLGPLG SSSPSFSTPG AKRPPQKPPA
101: RPPVPISAAG SPSIKTADIT AAARRKKRKL PEKQLPDRVA ALLPESALYT QLLEFEARVD AALARKKIDI QEALKSPPSM QRTLRIYVFN TFANQTRTIP
201: EPKNAEPPSW SLKIVGRILE DGVDPDPVGG LPKPNPIYPK FSSFFKRVTI ALDPSLYPEN PTILWEQARL PAAHEGFEIK RMGDKEFTAS IRLEMNYNPE
301: KFRLSPPLIE VLGIEVDTRA RIIAGIWQYV KAKKLQNPTD PSYFACDPPL RKVFGEDKMK FAMVSQKISP HLSPPQPIHL EHKIRLSGNG AVGNACYDVL
401: VDVPFPLQKE MSVFLANTEK HRDIEACEEV ICASIKKIHE HRRRRAFFLG FSQSPVEFIN ALIASQGRDL KLIAGEANRN AERERRSDFY NQPWVEDAVI
501: RYLNRKPATG NDAPGST

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.