Factsheet for Bra006242.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78564	Canola	plastid	90.85	99.56
AT5G14170.1	Thale cress	plastid	84.1	79.21
Os04t0382100-01	Rice	nucleus	45.92	66.76
VIT_14s0068g02140.t01	Wine grape	plastid	71.97	66.06
KRH57679	Soybean	nucleus	70.18	65.01
KRG94254	Soybean	nucleus	69.38	64.27
Zm00001d045433_P001	Maize	plastid	30.22	61.79
KRG94519	Soybean	nucleus	57.85	60.88
GSMUA_Achr9P01520_001	Banana	plastid	59.24	60.45
Solyc02g068100.2.1	Tomato	nucleus	63.82	59.01
GSMUA_Achr6P20740_001	Banana	plastid	60.24	58.61
KRH06950	Soybean	plastid	44.53	57.29
TraesCS2D01G280300.1	Wheat	plastid	58.45	56.11
TraesCS2B01G298800.1	Wheat	plastid	58.45	56.0
TraesCS2A01G281500.1	Wheat	nucleus	58.45	55.89
KXG36804	Sorghum	plastid	57.85	54.7
Zm00001d007039_P001	Maize	plastid	57.65	54.51
Zm00001d022322_P001	Maize	plastid	57.65	54.51
PGSC0003DMT400017831	Potato	nucleus, plastid	60.84	53.59
HORVU2Hr1G068970.1	Barley	cytosol	54.87	53.28

Protein Annotations

Gene3D:1.10.245.10	MapMan:12.4.2.2	EnsemblPlantsGene:Bra006242	EnsemblPlants:Bra006242.1	EnsemblPlants:Bra006242.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0010224	GO:GO:0010468	GO:GO:0048364	GO:GO:2000024	InterPro:IPR036885
UniProt:M4CPV3	PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	SMART:SM00151	SUPFAM:SSF47592
InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI000253FB41	SEG:seg	:

Description

AT5G14170 (E=8e-202) CHC1 | CHC1

Coordinates

chrA03:-:2661284..2662899

Molecular Weight (calculated)

55974.8 Da

IEP (calculated)

9.971

GRAVY (calculated)

-0.514

Length

503 amino acids

Sequence
(BLAST)

001: MSGNNNNPQG SAPSPFRSPG MMPSASVPGG FAQSHIATNF QAPFQFTQAQ AMAQAQSKVH AQMQAGMGIN QAQAPQEIGG LGQSSSPSMT TPGSSSNVKR
101: LMRPPSGFPN NTVSPMRTME LTPAARKKKQ KLPEKSLQER VAAILPESEL YTQLLEFESR VDAALSRKKV DIQEALKNPP CVQKTLRIYV FNTFANQNNN
201: PNADPATWTL KIVGRILEDG VDPETTNPLH PKFSSFFKKV QVSLDQRLYP ENPLITWENS RSPAPQEGFE IKRKGNQEFA ATIRLEMNYV PEKFKLSTAL
301: MDVLGIEVET RPRIIAAIWH YVKARKLQSP NDPSFFNCDA ALQKVFGEQK LKFTMVSQKL SHHLSPPPPI HLEHKIKLSG SSPAVSACYD VLVDVPVTIQ
401: RDLSNLLANA EKNKEIEACD EAICAAIRKI HEHRRRRAFF LGFSQSPAEF VNALMESQSK DLKVVAGEAS RNAERERGSD FFNQPWVEDA VIRYLNRRPA
501: RGN

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.