Factsheet for PGSC0003DMT400017831

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068100.2.1	Tomato	nucleus	79.16	83.09
CDY58407	Canola	plastid	56.04	66.25
CDX69600	Canola	plastid	55.87	66.05
KRH57679	Soybean	nucleus	62.7	65.93
Os04t0382100-01	Rice	nucleus	39.93	65.9
VIT_14s0068g02140.t01	Wine grape	plastid	63.22	65.88
KRG94254	Soybean	nucleus	62.52	65.75
CDX78564	Canola	plastid	52.19	64.92
AT5G14170.1	Thale cress	plastid	60.6	64.79
CDX70546	Canola	plastid	52.71	64.73
AT3G01890.1	Thale cress	plastid	49.74	62.01
Bra006242.1-P	Field mustard	plastid	53.59	60.84
Zm00001d045433_P001	Maize	plastid	26.09	60.57
KRG94519	Soybean	nucleus	50.44	60.25
GSMUA_Achr6P20740_001	Banana	plastid	54.29	59.96
GSMUA_Achr9P01520_001	Banana	plastid	51.31	59.43
KRH06950	Soybean	plastid	38.53	56.27
TraesCS2D01G280300.1	Wheat	plastid	51.49	56.11
TraesCS2B01G298800.1	Wheat	plastid	51.49	56.0
TraesCS2A01G281500.1	Wheat	nucleus	51.49	55.89
KXG36804	Sorghum	plastid	51.84	55.64
Zm00001d022322_P001	Maize	plastid	51.49	55.26
Zm00001d007039_P001	Maize	plastid	51.14	54.89
HORVU2Hr1G068970.1	Barley	cytosol	47.99	52.9
PGSC0003DMT400039420	Potato	plastid	46.76	50.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400017831	EnsemblPlantsGene:PGSC0003DMG400006925	EntrezGene:102602635	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF22	PFAM:PF02201	PGSC:PGSC0003DMG400006925	RefSeq:XP_006357192.1	SEG:seg	SMART:SM00151
SUPFAM:SSF47592	UniParc:UPI000294BB9C	UniProt:M1A9J6	MapMan:12.4.2.2	:	:

Description

Chromatin remodeling complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400006925]

Coordinates

chr2:+:26769358..26772607

Molecular Weight (calculated)

64715.9 Da

IEP (calculated)

10.460

GRAVY (calculated)

-0.555

Length

571 amino acids

Sequence
(BLAST)

001: MLKSIQNTSL NFDPEPPNRV STIVVSKFHK ILSITSNRKK SDNSGDSNVR FQIQKPKSLF RRLLGDFKPK QQHNIQFQND PGPPITRVGR FTLSLKKTID
101: HFPAIGNLLF PFFQAANSLS GEIKRQAHAL GNFGSSSPSM PGGGLAKRLP QKPPVRPPAF TTTNTISPMR TMDLSAAARR KKQKLPEKHM HEKVAAILPE
201: SSLYTQLLEF ESRVDSALTR KKVDIQESLK NPPTIQKTLR IYVFNSFANQ VRTIPKKPNA EPPTWTLKIV GRILEEGMDP DQAAMFQKTS SMYPKFSTFF
301: KRVTISLDQK LYPDNHIIIW DSARSPAPQD GFEVKRKGEQ EFTANLRLEL NYMPEKYKLS PALTEVLGIE VETRARIVSS IWHYVKARKL QNPDDPSYFN
401: CDPPLQKVFG EGKVKFNTVT QKITPHLSPP QPIHLEHRIK LIGNNPVGTA CYDVLVDVPF PIQRELNALL ANTEKTKEIE TCDEAICSAI RKIHEHRRRR
501: AFFLGFSQSP VEFINALLES QSKDLKVVSG EPSRNVEKER RSQFYSQPWV EDAVIRYLNR KPAASDAPGS G

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.