Factsheet for GSMUA_Achr9P01520_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P20740_001	Banana	plastid	87.83	83.75
Os04t0382100-01	Rice	nucleus	55.17	78.61
VIT_17s0000g01500.t01	Wine grape	cytosol	58.42	72.18
Zm00001d045433_P001	Maize	plastid	35.7	71.54
TraesCS2D01G280300.1	Wheat	plastid	72.21	67.94
TraesCS2B01G298800.1	Wheat	plastid	72.21	67.81
TraesCS2A01G281500.1	Wheat	nucleus	72.21	67.68
KXG36804	Sorghum	plastid	70.99	65.79
CDX78564	Canola	plastid	60.65	65.14
Zm00001d007039_P001	Maize	plastid	69.78	64.66
CDX70546	Canola	plastid	60.24	63.87
Zm00001d022322_P001	Maize	plastid	68.76	63.72
CDX69600	Canola	plastid	62.07	63.35
HORVU2Hr1G068970.1	Barley	cytosol	66.53	63.32
CDY58407	Canola	plastid	61.87	63.15
VIT_14s0068g02140.t01	Wine grape	plastid	69.57	62.59
KRH57679	Soybean	nucleus	67.14	60.96
AT5G14170.1	Thale cress	plastid	65.92	60.86
KRG94254	Soybean	nucleus	66.13	60.04
AT3G01890.1	Thale cress	plastid	55.38	59.61
Bra006242.1-P	Field mustard	plastid	60.45	59.24
KRG94519	Soybean	nucleus	55.58	57.32
Solyc02g068100.2.1	Tomato	nucleus	62.68	56.8
KRH06950	Soybean	plastid	41.99	52.94
KRH57226	Soybean	nucleus	54.77	52.63
PGSC0003DMT400039420	Potato	plastid	55.78	52.28
Solyc03g111250.2.1	Tomato	nucleus	55.78	52.28
PGSC0003DMT400017831	Potato	nucleus, plastid	59.43	51.31
KRH63759	Soybean	plastid	54.77	51.04
KRH03955	Soybean	nucleus	54.16	50.86
KRH54192	Soybean	plastid	54.16	50.09

Protein Annotations

EnsemblPlants:GSMUA_Achr9P01520_001	EnsemblPlants:GSMUA_Achr9T01520_001	EnsemblPlantsGene:GSMUA_Achr9G01520_001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF22	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000296D397
UniProt:M0TWK9	MapMan:12.4.2.2	:	:	:	:

Description

SWI/SNF complex component SNF12 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G01520_001]

Coordinates

chr9:-:1164490..1166292

Molecular Weight (calculated)

54969.0 Da

IEP (calculated)

10.034

GRAVY (calculated)

-0.511

Length

493 amino acids

Sequence
(BLAST)

001: MASNNNNQPR GVGGPPPLGN PGMASPASAN QPPHLRPPPP PGSSPFQGLF HSQAHPQAQP QVHSPFQIQM GSQSQPPARP PAPISAAASP IIKAADITAA
101: ARRKKRRLPE KQLPDRVAAL LPESALYTQL LEFEARVDAA LARKKIDIQE ALRSPPSMQR TLRIYVFNTF ANQTRMIPEP MEPPSWSLKI VGRILEDGVD
201: PDPAGALPKP NPMYPKFSSF FRRVTIALDP SLYPENPTIV WEQARSPVPQ EGFEVKRRGD KEFTASIRLE MNYNPEKFRL SPPLMEVLGI EVDTRARIIA
301: GIWQYVKAKK LQSTTDSSYF ACDPPLKKIF GEDKMKFAMV SQKISHHLYP PQPIHLEHKI RLSGNGAVGN ACYDVLVDVP FPLQKEMSAF LANTEKHRDI
401: EACDEVICAS IKKIHEHRRR RAFFLGFSQS PVEFINTLIA SQSRDLKLVA GEASRNAERE RRSDFYNQPW VEDAVIRYLN RKPAAGNDAP GST

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.