Factsheet for VIT_17s0000g01500.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0382100-01	Rice	nucleus	59.9	69.08
Zm00001d045433_P001	Maize	plastid	38.1	61.79
GSMUA_Achr9P01520_001	Banana	plastid	72.18	58.42
GSMUA_Achr6P20740_001	Banana	plastid	73.18	56.48
VIT_14s0068g02140.t01	Wine grape	plastid	76.94	56.02
HORVU2Hr1G068970.1	Barley	cytosol	70.43	54.25
TraesCS2D01G280300.1	Wheat	plastid	70.43	53.63
TraesCS2B01G298800.1	Wheat	plastid	70.43	53.52
TraesCS2A01G281500.1	Wheat	nucleus	70.43	53.42
KXG36804	Sorghum	plastid	70.93	53.2
Zm00001d007039_P001	Maize	plastid	70.68	53.01
Zm00001d022322_P001	Maize	plastid	70.68	53.01
KRH57226	Soybean	nucleus	65.66	51.07
KRH03955	Soybean	nucleus	65.66	49.9
PGSC0003DMT400039420	Potato	plastid	65.66	49.81
KRH63759	Soybean	plastid	65.66	49.53
Solyc03g111250.2.1	Tomato	nucleus	64.91	49.24
KRH54192	Soybean	plastid	64.41	48.22

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100250968	wikigene:100250968	MapMan:12.4.2.2	ProteinID:CBI15655	ProteinID:CBI15655.3
UniProt:D7SGX5	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885
EntrezGene:LOC100250968	wikigene:LOC100250968	PFAM:PF02201	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22	SMART:SM00151
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI0001BE0EC5	ArrayExpress:VIT_17s0000g01500
EnsemblPlantsGene:VIT_17s0000g01500	EnsemblPlants:VIT_17s0000g01500.t01	RefSeq:XP_002279969	RefSeq:XP_002279969.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:-:1071697..1074613

Molecular Weight (calculated)

45537.7 Da

IEP (calculated)

9.444

GRAVY (calculated)

-0.515

Length

399 amino acids

Sequence
(BLAST)

001: MELTPAARRK KPKLPEKQIP DKIAALVPES AIYTQLVELE ARVDAALARK KTDIQESLKN PHRVQKTLRI YVFNTFANQT RMNPEKTNAE PPSWTLKIIG
101: RILEDGVDPV LAGTSDKLSS SYPKFSSFFK KMTIYLDQGL YPDNHVILWE NARSPTLHEG FEVQRKGDKE FNAIIRLEMN YVPEKFKLST ALSEVLGLEV
201: DTRPRIVAAI WHYVKSRKLQ NPNDPSFFVC DPPLRKVFGE EKIKFAMVPQ KISHHLSPPQ PIHLEHKVKL SGNSPAGTTC YDVLVDVPLP LEKEMSAFLA
301: NTERHKEIDA YDETICASIK KIQEHNRRRA FFLGFSHSPA EFINALITSQ SRDLKLVAGD ASRNAEKERR ADFYNQPWVD DAVIRYLNRK PAPGMEAHE

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.