Factsheet for TraesCS2D01G280300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G281500.1	Wheat	nucleus	100.0	99.62
TraesCS2B01G298800.1	Wheat	plastid	99.62	99.43
Os04t0382100-01	Rice	nucleus	61.26	92.77
Zm00001d045433_P001	Maize	plastid	42.37	90.24
KXG36804	Sorghum	plastid	87.02	85.71
Zm00001d007039_P001	Maize	plastid	86.26	84.96
Zm00001d022322_P001	Maize	plastid	81.68	80.45
HORVU2Hr1G068970.1	Barley	cytosol	78.82	79.73
GSMUA_Achr9P01520_001	Banana	plastid	67.94	72.21
VIT_17s0000g01500.t01	Wine grape	cytosol	53.63	70.43
GSMUA_Achr6P20740_001	Banana	plastid	68.89	69.83
CDX78564	Canola	plastid	56.11	64.05
CDY58407	Canola	plastid	58.78	63.77
CDX69600	Canola	plastid	58.4	63.35
AT3G01890.1	Thale cress	plastid	55.15	63.1
CDX70546	Canola	plastid	55.92	63.01
VIT_14s0068g02140.t01	Wine grape	plastid	63.93	61.13
AT5G14170.1	Thale cress	plastid	62.02	60.86
KRH57679	Soybean	nucleus	61.45	59.3
KRG94254	Soybean	nucleus	61.26	59.12
Bra006242.1-P	Field mustard	plastid	56.11	58.45
KRG94519	Soybean	nucleus	51.53	56.49
Solyc02g068100.2.1	Tomato	nucleus	57.06	54.96
KRH57226	Soybean	nucleus	52.48	53.61
KRH03955	Soybean	nucleus	52.67	52.57
KRH06950	Soybean	plastid	39.12	52.43
PGSC0003DMT400017831	Potato	nucleus, plastid	56.11	51.49
PGSC0003DMT400039420	Potato	plastid	50.57	50.38
Solyc03g111250.2.1	Tomato	nucleus	50.38	50.19
KRH63759	Soybean	plastid	50.19	49.72
KRH54192	Soybean	plastid	49.43	48.59

Protein Annotations

EnsemblPlants:TraesCS2D01G280300.1	EnsemblPlantsGene:TraesCS2D01G280300	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:12.4.2.2	:

Description

No Description!

Coordinates

chr2D:+:352624657..352626342

Molecular Weight (calculated)

57428.7 Da

IEP (calculated)

10.265

GRAVY (calculated)

-0.512

Length

524 amino acids

Sequence
(BLAST)

001: MATGGNPNPN ANPGQPRPQQ QPPGSSPATP HNHMRPPTLA GSPFQGLFHT PPSHNPAFQI HMGAASSPQT PLMAAAAASA AASAKRPPQK PPSRPPAPTS
101: NAAAAASMAA AYKAANSGSV DLTPAARRNK KRKLPEKQLP DRVAALLPES ALYTQLLEFE ARVDAALARK KVDIQEALKT PPSLQRTLRI YVFNTFANQA
201: PRTIPPPKNG DPPTWSLKII GRVLEDGAEL DPASVVPKHN PVYPKFSSFF KRVTIALDSS LYPENPLIVW ENARSAAPQE GFEVKRKGDK EFLANIRLEM
301: NYNPEKFKLS QPLMEVLGVE VDTRARVIAA LWQYIKAKKL QNPSDPSYFM CDPQLKKVFG EDKMRFAMLS QKISQHLAPP PPINLEHKIK LSGNGANSSA
401: CYDVLVDVPF PLQKEMTAFL ANTEKHKDIE ACDEVISASI KKIHEHRRRR AFFLGFSQSP VEFINALIAS QSKDLKLVAG EASRNIERER RADFYNQPWV
501: EDAVIRYLNR KPPGGNDGPG AGGS

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.